Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MKC entry

There are 6 chains in PDB entry 5MKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 145	VAL 721
B	TYR 145	ASP 720
C	TYR 145	ASP 720
D	GLN 144	ASP 720
E	GLN 144	ASP 720
F	GLN 144	ASP 720

There are 12 helices in PDB entry 5MKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	617	619	Right-handed 310
Helix 2	AA2	A	644	648	Right-handed 310
Helix 3	AA3	B	617	619	Right-handed 310
Helix 4	AA4	B	644	648	Right-handed 310
Helix 5	AA5	C	617	619	Right-handed 310
Helix 6	AA6	C	644	648	Right-handed 310
Helix 7	AA7	D	617	619	Right-handed 310
Helix 8	AA8	D	644	648	Right-handed 310
Helix 9	AA9	E	617	619	Right-handed 310
Helix 10	AB1	E	644	648	Right-handed 310
Helix 11	AB2	F	617	619	Right-handed 310
Helix 12	AB3	F	644	648	Right-handed 310

There are 42 sheets in PDB entry 5MKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	174	178	anti-parallel
Strand 4	A	717	718	anti-parallel
Strand 5	A	692	693	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	171	172	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	187	198	anti-parallel
Strand 3	A	203	211	anti-parallel
Strand 4	A	673	682	anti-parallel
Strand 5	A	606	608	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	187	198	anti-parallel
Strand 3	A	203	211	anti-parallel
Strand 4	A	673	682	anti-parallel
Strand 5	A	621	625	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	590	591	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	655	first strand
Strand 2	A	660	668	anti-parallel
Strand 3	A	593	601	anti-parallel
Strand 4	A	699	701	anti-parallel
Strand 5	A	711	712	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	632	first strand
Strand 2	A	635	637	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	174	177	anti-parallel
Strand 4	B	717	718	anti-parallel
Strand 5	B	692	693	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	171	172	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	187	198	anti-parallel
Strand 3	B	203	211	anti-parallel
Strand 4	B	673	682	anti-parallel
Strand 5	B	606	608	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	187	198	anti-parallel
Strand 3	B	203	211	anti-parallel
Strand 4	B	673	682	anti-parallel
Strand 5	B	621	625	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	590	591	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	655	first strand
Strand 2	B	660	668	anti-parallel
Strand 3	B	593	601	anti-parallel
Strand 4	B	699	701	anti-parallel
Strand 5	B	711	712	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	632	first strand
Strand 2	B	635	637	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	156	162	anti-parallel
Strand 3	C	174	178	anti-parallel
Strand 4	C	717	718	anti-parallel
Strand 5	C	692	693	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	171	172	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	187	198	anti-parallel
Strand 3	C	203	211	anti-parallel
Strand 4	C	673	682	anti-parallel
Strand 5	C	606	608	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	187	198	anti-parallel
Strand 3	C	203	211	anti-parallel
Strand 4	C	673	682	anti-parallel
Strand 5	C	621	625	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	590	591	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	655	first strand
Strand 2	C	660	668	anti-parallel
Strand 3	C	593	601	anti-parallel
Strand 4	C	699	701	anti-parallel
Strand 5	C	711	712	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	632	first strand
Strand 2	C	635	637	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	156	162	anti-parallel
Strand 3	D	174	178	anti-parallel
Strand 4	D	717	718	anti-parallel
Strand 5	D	692	693	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	187	198	anti-parallel
Strand 3	D	203	211	anti-parallel
Strand 4	D	673	682	anti-parallel
Strand 5	D	606	608	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	184	first strand
Strand 2	D	187	198	anti-parallel
Strand 3	D	203	211	anti-parallel
Strand 4	D	673	682	anti-parallel
Strand 5	D	621	625	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	590	591	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	655	first strand
Strand 2	D	660	668	anti-parallel
Strand 3	D	593	601	anti-parallel
Strand 4	D	699	701	anti-parallel
Strand 5	D	711	712	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	630	632	first strand
Strand 2	D	635	637	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	150	first strand
Strand 2	E	157	162	anti-parallel
Strand 3	E	174	178	anti-parallel
Strand 4	E	717	718	anti-parallel
Strand 5	E	692	693	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	171	172	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	184	first strand
Strand 2	E	187	198	anti-parallel
Strand 3	E	203	211	anti-parallel
Strand 4	E	673	682	anti-parallel
Strand 5	E	606	608	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	184	first strand
Strand 2	E	187	198	anti-parallel
Strand 3	E	203	211	anti-parallel
Strand 4	E	673	682	anti-parallel
Strand 5	E	621	625	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	590	591	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	651	655	first strand
Strand 2	E	660	668	anti-parallel
Strand 3	E	593	601	anti-parallel
Strand 4	E	699	701	anti-parallel
Strand 5	E	711	712	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	630	632	first strand
Strand 2	E	635	637	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	150	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	174	177	anti-parallel
Strand 4	F	717	718	anti-parallel
Strand 5	F	692	693	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	171	172	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	184	first strand
Strand 2	F	187	198	anti-parallel
Strand 3	F	203	211	anti-parallel
Strand 4	F	673	682	anti-parallel
Strand 5	F	606	608	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	184	first strand
Strand 2	F	187	198	anti-parallel
Strand 3	F	203	211	anti-parallel
Strand 4	F	673	682	anti-parallel
Strand 5	F	621	625	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	215	first strand
Strand 2	F	590	591	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	651	655	first strand
Strand 2	F	660	668	anti-parallel
Strand 3	F	593	601	anti-parallel
Strand 4	F	699	701	anti-parallel
Strand 5	F	711	712	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	629	632	first strand
Strand 2	F	635	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKC