Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MKE entry

There are 4 chains in PDB entry 5MKE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 215	LYS 695
B	LYS 215	LYS 695
C	LYS 215	LYS 695
D	LYS 215	LYS 695

There are 64 helices in PDB entry 5MKE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	242	Right-handed alpha
Helix 2	AA2	A	245	255	Right-handed alpha
Helix 3	AA3	A	276	278	Right-handed 310
Helix 4	AA4	A	279	284	Right-handed alpha
Helix 5	AA5	A	286	291	Right-handed alpha
Helix 6	AA6	A	335	340	Right-handed 310
Helix 7	AA7	A	362	367	Right-handed 310
Helix 8	AA8	A	398	412	Right-handed alpha
Helix 9	AA9	A	469	498	Right-handed alpha
Helix 10	AB1	A	508	542	Right-handed alpha
Helix 11	AB2	A	548	578	Right-handed alpha
Helix 12	AB3	A	581	593	Right-handed alpha
Helix 13	AB4	A	594	620	Right-handed alpha
Helix 14	AB5	A	628	642	Right-handed alpha
Helix 15	AB6	A	645	653	Right-handed alpha
Helix 16	AB7	A	658	693	Right-handed alpha
Helix 17	AB8	B	216	242	Right-handed alpha
Helix 18	AB9	B	245	255	Right-handed alpha
Helix 19	AC1	B	276	278	Right-handed 310
Helix 20	AC2	B	279	284	Right-handed alpha
Helix 21	AC3	B	286	291	Right-handed alpha
Helix 22	AC4	B	335	340	Right-handed 310
Helix 23	AC5	B	362	367	Right-handed 310
Helix 24	AC6	B	398	412	Right-handed alpha
Helix 25	AC7	B	469	498	Right-handed alpha
Helix 26	AC8	B	508	542	Right-handed alpha
Helix 27	AC9	B	548	578	Right-handed alpha
Helix 28	AD1	B	581	593	Right-handed alpha
Helix 29	AD2	B	594	620	Right-handed alpha
Helix 30	AD3	B	628	642	Right-handed alpha
Helix 31	AD4	B	645	653	Right-handed alpha
Helix 32	AD5	B	658	693	Right-handed alpha
Helix 33	AD6	C	216	242	Right-handed alpha
Helix 34	AD7	C	245	255	Right-handed alpha
Helix 35	AD8	C	276	278	Right-handed 310
Helix 36	AD9	C	279	284	Right-handed alpha
Helix 37	AE1	C	286	291	Right-handed alpha
Helix 38	AE2	C	335	340	Right-handed 310
Helix 39	AE3	C	362	367	Right-handed 310
Helix 40	AE4	C	398	412	Right-handed alpha
Helix 41	AE5	C	469	498	Right-handed alpha
Helix 42	AE6	C	508	542	Right-handed alpha
Helix 43	AE7	C	548	578	Right-handed alpha
Helix 44	AE8	C	581	593	Right-handed alpha
Helix 45	AE9	C	594	620	Right-handed alpha
Helix 46	AF1	C	628	642	Right-handed alpha
Helix 47	AF2	C	645	653	Right-handed alpha
Helix 48	AF3	C	658	693	Right-handed alpha
Helix 49	AF4	D	216	242	Right-handed alpha
Helix 50	AF5	D	245	255	Right-handed alpha
Helix 51	AF6	D	276	278	Right-handed 310
Helix 52	AF7	D	279	284	Right-handed alpha
Helix 53	AF8	D	286	291	Right-handed alpha
Helix 54	AF9	D	335	340	Right-handed 310
Helix 55	AG1	D	362	367	Right-handed 310
Helix 56	AG2	D	398	412	Right-handed alpha
Helix 57	AG3	D	469	498	Right-handed alpha
Helix 58	AG4	D	508	542	Right-handed alpha
Helix 59	AG5	D	548	578	Right-handed alpha
Helix 60	AG6	D	581	593	Right-handed alpha
Helix 61	AG7	D	594	620	Right-handed alpha
Helix 62	AG8	D	628	642	Right-handed alpha
Helix 63	AG9	D	645	653	Right-handed alpha
Helix 64	AH1	D	658	693	Right-handed alpha

There are 8 sheets in PDB entry 5MKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	320	321	anti-parallel
Strand 3	A	421	429	anti-parallel
Strand 4	A	442	444	anti-parallel
Strand 5	A	452	453	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	320	321	anti-parallel
Strand 3	A	421	429	anti-parallel
Strand 4	A	436	440	anti-parallel
Strand 5	A	456	460	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	320	321	anti-parallel
Strand 3	B	421	429	anti-parallel
Strand 4	B	442	444	anti-parallel
Strand 5	B	452	453	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	320	321	anti-parallel
Strand 3	B	421	429	anti-parallel
Strand 4	B	436	440	anti-parallel
Strand 5	B	456	460	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	320	321	anti-parallel
Strand 3	C	421	429	anti-parallel
Strand 4	C	442	444	anti-parallel
Strand 5	C	452	453	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	320	321	anti-parallel
Strand 3	C	421	429	anti-parallel
Strand 4	C	436	440	anti-parallel
Strand 5	C	456	460	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	320	321	anti-parallel
Strand 3	D	421	429	anti-parallel
Strand 4	D	442	444	anti-parallel
Strand 5	D	452	453	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	320	321	anti-parallel
Strand 3	D	421	429	anti-parallel
Strand 4	D	436	440	anti-parallel
Strand 5	D	456	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MKE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKE