Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MKG entry

There are 2 chains in PDB entry 5MKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLN 260
B
 SER 6GLY 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5MKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
53 56Right-handed 310
Helix 3
AA3
A
57 65Right-handed alpha
Helix 4
AA4
A
66 84Right-handed alpha
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
A
107 119Right-handed alpha
Helix 8
AA8
A
144 153Right-handed alpha
Helix 9
AA9
A
183 189Right-handed alpha
Helix 10
AB1
A
193 210Right-handed alpha
Helix 11
AB2
A
221 230Right-handed alpha
Helix 12
AB3
A
246 259Right-handed alpha
Helix 13
AB4
B
7 17Right-handed alpha
Helix 14
AB5
B
53 56Right-handed 310
Helix 15
AB6
B
57 65Right-handed alpha
Helix 16
AB7
B
66 84Right-handed alpha
Helix 17
AB8
B
85 89Right-handed 310
Helix 18
AB9
B
100 105Right-handed alpha
Helix 19
AC1
B
108 119Right-handed alpha
Helix 20
AC2
B
132 137Right-handed alpha
Helix 21
AC3
B
140 153Right-handed alpha
Helix 22
AC4
B
183 189Right-handed alpha
Helix 23
AC5
B
193 210Right-handed alpha
Helix 24
AC6
B
221 230Right-handed alpha
Helix 25
AC7
B
246 259Right-handed alpha
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There are 2 sheets in PDB entry 5MKG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
37 46anti-parallel
Strand 3
A
93 98parallel
Strand 4
A
125 132parallel
Strand 5
A
156 162parallel
Strand 6
A
179 182parallel
Strand 7
A
213 216parallel
Strand 8
A
235 236parallel
Strand 9
A
20 29anti-parallel
Strand 10
A
37 46anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
37 46anti-parallel
Strand 3
B
93 98parallel
Strand 4
B
125 131parallel
Strand 5
B
156 162parallel
Strand 6
B
179 182parallel
Strand 7
B
213 216parallel
Strand 8
B
235 236parallel
Strand 9
B
20 29anti-parallel
Strand 10
B
37 46anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il