Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MKQ entry

There are 2 chains in PDB entry 5MKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 308
B
 SER 0PHE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5MKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 42Right-handed alpha
Helix 2
AA2
A
57 70Right-handed alpha
Helix 3
AA3
A
86 102Right-handed alpha
Helix 4
AA4
A
110 114Right-handed alpha
Helix 5
AA5
A
126 146Right-handed alpha
Helix 6
AA6
A
156 170Right-handed alpha
Helix 7
AA7
A
172 178Right-handed alpha
Helix 8
AA8
A
200 212Right-handed alpha
Helix 9
AA9
A
227 242Right-handed alpha
Helix 10
AB1
A
244 257Right-handed alpha
Helix 11
AB2
A
258 264Right-handed 310
Helix 12
AB3
A
284 291Right-handed alpha
Helix 13
AB4
B
22 42Right-handed alpha
Helix 14
AB5
B
57 70Right-handed alpha
Helix 15
AB6
B
86 102Right-handed alpha
Helix 16
AB7
B
110 114Right-handed alpha
Helix 17
AB8
B
126 146Right-handed alpha
Helix 18
AB9
B
156 170Right-handed alpha
Helix 19
AC1
B
172 178Right-handed alpha
Helix 20
AC2
B
200 212Right-handed alpha
Helix 21
AC3
B
227 242Right-handed alpha
Helix 22
AC4
B
244 257Right-handed alpha
Helix 23
AC5
B
258 264Right-handed 310
Helix 24
AC6
B
284 291Right-handed alpha
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There are 6 sheets in PDB entry 5MKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
19 21anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
73 80parallel
Strand 3
A
49 53parallel
Strand 4
A
150 152parallel
Strand 5
A
191 193parallel
Strand 6
A
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
278 279anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
19 21anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
73 80parallel
Strand 3
B
49 53parallel
Strand 4
B
150 152parallel
Strand 5
B
191 193parallel
Strand 6
B
182 183anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
278 279anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il