Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MKT entry

There is 1 chain in PDB entry 5MKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ALA 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5MKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
98 103Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
158 163Right-handed alpha
Helix 5
AA5
A
185 194Right-handed alpha
Helix 6
AA6
A
222 226Right-handed 310
Helix 7
AA7
A
275 285Right-handed alpha
Helix 8
AA8
A
357 363Right-handed alpha
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There are 5 sheets in PDB entry 5MKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
374 379anti-parallel
Strand 6
A
227 234anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
74 81anti-parallel
Strand 4
A
169 172parallel
Strand 5
A
87 90anti-parallel
Strand 6
A
145 156parallel
Strand 7
A
131 142anti-parallel
Strand 8
A
116 124anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
131 142anti-parallel
Strand 4
A
116 124anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
261 264anti-parallel
Strand 3
A
353 355parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
248 250anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
316 320anti-parallel
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