Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MLC entry

There are 32 chains in PDB entry 5MLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 1	U 2811
B	A 2	U 121
C	G 1	C 103
D	ASN 26	SER 271
E	SER 85	PRO 303
F	PRO 56	GLY 260
G	ILE 16	GLU 194
H	GLU 40	GLY 217
I	LYS 43	VAL 87
L	THR 55	LYS 250
M	MET 1	VAL 120
N	THR 78	LYS 259
O	MET 1	GLY 135
P	MET 11	VAL 126
Q	ARG 49	PHE 166
R	VAL 117	SER 230
S	THR 2	LYS 117
T	PRO 101	THR 234
U	GLU 25	ARG 176
V	TYR 104	PHE 194
W	ARG 47	LYS 175
X	HIS 59	LYS 166
Y	ARG 72	ARG 146
Z	VAL 59	LEU 152
2	ALA 2	SER 43
3	ASP 6	LYS 65
4	GLY 92	PRO 152
5	TYR 90	VAL 159
6	MET 1	GLY 37
9	SER 89	VAL 271
7	GLN 97	VAL 142
8	SER 48	SER 94

There are 93 helices in PDB entry 5MLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	203	209	Right-handed alpha
Helix 2	AA2	E	150	161	Right-handed alpha
Helix 3	AA3	E	210	216	Right-handed alpha
Helix 4	AA4	F	81	96	Right-handed alpha
Helix 5	AA5	F	153	169	Right-handed alpha
Helix 6	AA6	F	186	198	Right-handed alpha
Helix 7	AA7	F	213	222	Right-handed alpha
Helix 8	AA8	F	235	242	Right-handed alpha
Helix 9	AA9	F	249	259	Right-handed alpha
Helix 10	AB1	G	17	26	Right-handed alpha
Helix 11	AB2	G	31	36	Right-handed alpha
Helix 12	AB3	G	56	60	Right-handed 310
Helix 13	AB4	G	63	74	Right-handed alpha
Helix 14	AB5	G	108	121	Right-handed alpha
Helix 15	AB6	G	122	126	Right-handed 310
Helix 16	AB7	G	177	189	Right-handed alpha
Helix 17	AB8	H	99	104	Right-handed alpha
Helix 18	AB9	H	104	121	Right-handed alpha
Helix 19	AC1	H	178	192	Right-handed alpha
Helix 20	AC2	H	213	217	Right-handed 310
Helix 21	AC3	I	70	77	Right-handed alpha
Helix 22	AC4	I	77	82	Right-handed alpha
Helix 23	AC5	L	56	74	Right-handed alpha
Helix 24	AC6	L	123	137	Right-handed alpha
Helix 25	AC7	L	157	161	Right-handed 310
Helix 26	AC8	L	166	171	Right-handed alpha
Helix 27	AC9	L	188	195	Right-handed alpha
Helix 28	AD1	L	196	206	Right-handed alpha
Helix 29	AD2	L	211	217	Right-handed alpha
Helix 30	AD3	M	103	108	Right-handed 310
Helix 31	AD4	M	110	116	Right-handed alpha
Helix 32	AD5	N	135	139	Right-handed 310
Helix 33	AD6	N	161	166	Right-handed alpha
Helix 34	AD7	N	177	184	Right-handed alpha
Helix 35	AD8	N	191	196	Right-handed 310
Helix 36	AD9	N	218	229	Right-handed alpha
Helix 37	AE1	N	243	259	Right-handed alpha
Helix 38	AE2	O	22	26	Right-handed 310
Helix 39	AE3	O	44	57	Right-handed alpha
Helix 40	AE4	O	110	125	Right-handed alpha
Helix 41	AE5	P	23	42	Right-handed alpha
Helix 42	AE6	P	48	53	Right-handed alpha
Helix 43	AE7	P	54	65	Right-handed alpha
Helix 44	AE8	P	69	81	Right-handed alpha
Helix 45	AE9	P	82	87	Right-handed alpha
Helix 46	AF1	P	87	92	Right-handed alpha
Helix 47	AF2	P	92	97	Right-handed alpha
Helix 48	AF3	P	113	117	Right-handed 310
Helix 49	AF4	Q	50	65	Right-handed alpha
Helix 50	AF5	Q	102	107	Right-handed alpha
Helix 51	AF6	Q	116	135	Right-handed alpha
Helix 52	AF7	Q	150	163	Right-handed alpha
Helix 53	AF8	R	121	138	Right-handed alpha
Helix 54	AF9	R	175	178	Right-handed 310
Helix 55	AG1	R	219	225	Right-handed 310
Helix 56	AG2	S	6	9	Right-handed 310
Helix 57	AG3	S	10	22	Right-handed alpha
Helix 58	AG4	S	26	30	Right-handed 310
Helix 59	AG5	S	31	70	Right-handed alpha
Helix 60	AG6	S	77	88	Right-handed alpha
Helix 61	AG7	S	93	104	Right-handed alpha
Helix 62	AG8	S	104	117	Right-handed alpha
Helix 63	AG9	T	102	111	Right-handed alpha
Helix 64	AH1	U	42	51	Right-handed alpha
Helix 65	AH2	U	57	68	Right-handed alpha
Helix 66	AH3	U	72	90	Right-handed alpha
Helix 67	AH4	U	118	120	Right-handed 310
Helix 68	AH5	U	142	149	Right-handed alpha
Helix 69	AH6	V	121	132	Right-handed alpha
Helix 70	AH7	V	143	156	Right-handed alpha
Helix 71	AH8	V	183	190	Right-handed alpha
Helix 72	AH9	X	149	166	Right-handed alpha
Helix 73	AI1	Y	122	132	Right-handed alpha
Helix 74	AI2	Y	133	139	Right-handed alpha
Helix 75	AI3	Z	61	68	Right-handed alpha
Helix 76	AI4	Z	72	89	Right-handed alpha
Helix 77	AI5	Z	102	127	Right-handed alpha
Helix 78	AI6	Z	131	143	Right-handed alpha
Helix 79	AI7	2	11	39	Right-handed alpha
Helix 80	AI8	4	104	113	Right-handed alpha
Helix 81	AI9	4	113	120	Right-handed alpha
Helix 82	AJ1	4	120	134	Right-handed alpha
Helix 83	AJ2	5	98	102	Right-handed 310
Helix 84	AJ3	5	125	134	Right-handed alpha
Helix 85	AJ4	5	142	150	Right-handed alpha
Helix 86	AJ5	9	90	113	Right-handed alpha
Helix 87	AJ6	9	194	231	Right-handed alpha
Helix 88	AJ7	9	237	253	Right-handed alpha
Helix 89	AJ8	9	253	270	Right-handed alpha
Helix 90	AJ9	7	100	128	Right-handed alpha
Helix 91	AK1	7	132	139	Right-handed alpha
Helix 92	AK2	8	55	62	Right-handed alpha
Helix 93	AK3	8	68	73	Right-handed alpha

There are 37 sheets in PDB entry 5MLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	58	59	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	101	first strand
Strand 2	D	87	92	anti-parallel
Strand 3	D	72	78	anti-parallel
Strand 4	D	111	112	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	185	188	anti-parallel
Strand 3	D	136	138	anti-parallel
Strand 4	D	158	164	anti-parallel
Strand 5	D	167	171	anti-parallel
Strand 6	D	177	181	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	264	first strand
Strand 2	E	197	199	anti-parallel
Strand 3	E	289	294	anti-parallel
Strand 4	E	92	102	anti-parallel
Strand 5	E	110	116	anti-parallel
Strand 6	E	275	279	anti-parallel
Strand 7	E	266	270	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	136	143	anti-parallel
Strand 3	E	165	172	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	209	first strand
Strand 2	E	252	255	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	244	248	parallel
Strand 3	F	205	208	parallel
Strand 4	F	228	229	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	84	first strand
Strand 2	G	99	106	anti-parallel
Strand 3	G	46	53	anti-parallel
Strand 4	G	167	173	anti-parallel
Strand 5	G	143	147	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	173	first strand
Strand 2	H	125	130	anti-parallel
Strand 3	H	201	204	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	138	first strand
Strand 2	H	143	146	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	53	first strand
Strand 2	I	84	86	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	221	222	first strand
Strand 2	L	153	156	parallel
Strand 3	L	115	118	parallel
Strand 4	L	237	238	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	172	176	first strand
Strand 2	L	183	187	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	7	10	first strand
Strand 2	M	16	25	anti-parallel
Strand 3	M	38	46	anti-parallel
Strand 4	M	57	64	anti-parallel
Strand 5	M	83	85	anti-parallel
Strand 6	M	7	10	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	69	70	first strand
Strand 2	M	76	79	anti-parallel
Strand 3	R	191	197	anti-parallel
Strand 4	R	180	186	anti-parallel
Strand 5	R	163	173	anti-parallel
Strand 6	R	147	153	anti-parallel
Strand 7	R	203	211	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	211	214	first strand
Strand 2	N	231	234	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	63	66	first strand
Strand 2	O	102	107	anti-parallel
Strand 3	O	32	36	anti-parallel
Strand 4	O	129	133	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	43	first strand
Strand 2	O	90	97	anti-parallel
Strand 3	O	72	75	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	43	47	first strand
Strand 2	P	120	125	anti-parallel
Strand 3	P	105	108	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	94	99	first strand
Strand 2	Q	83	87	anti-parallel
Strand 3	Q	72	75	anti-parallel
Strand 4	Q	140	142	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	133	136	first strand
Strand 2	T	124	128	anti-parallel
Strand 3	T	161	165	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	140	145	first strand
Strand 2	T	216	223	anti-parallel
Strand 3	T	182	188	anti-parallel
Strand 4	T	154	158	anti-parallel
Strand 5	8	89	90	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	195	201	first strand
Strand 2	T	206	212	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	32	34	first strand
Strand 2	U	130	137	anti-parallel
Strand 3	U	37	39	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	32	34	first strand
Strand 2	U	130	137	anti-parallel
Strand 3	U	99	107	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	111	116	first strand
Strand 2	U	122	127	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	117	118	first strand
Strand 2	V	133	137	anti-parallel
Strand 3	V	171	177	anti-parallel
Strand 4	V	161	167	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	129	130	first strand
Strand 2	W	98	101	anti-parallel
Strand 3	W	86	93	anti-parallel
Strand 4	W	74	77	anti-parallel
Strand 5	W	134	136	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	110	111	first strand
Strand 2	W	121	122	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	148	151	first strand
Strand 2	W	157	160	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	78	79	first strand
Strand 2	X	92	95	anti-parallel
Strand 3	X	115	117	anti-parallel
Strand 4	X	107	109	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	101	103	first strand
Strand 2	X	133	138	parallel
Strand 3	X	122	124	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	83	85	first strand
Strand 2	Y	97	99	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	104	109	first strand
Strand 2	Y	116	121	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	8	13	first strand
Strand 2	3	33	38	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	47	49	first strand
Strand 2	3	60	62	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	103	104	first strand
Strand 2	5	110	112	anti-parallel
Strand 3	5	136	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLC