Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MLN entry

There are 2 chains in PDB entry 5MLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ALA 241
B
 THR 4ALA 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5MLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
66 72Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
A
102 114Right-handed alpha
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
144 148Right-handed 310
Helix 9
AA9
A
154 176Right-handed alpha
Helix 10
AB1
A
192 196Right-handed 310
Helix 11
AB2
A
211 224Right-handed alpha
Helix 12
AB3
B
14 27Right-handed alpha
Helix 13
AB4
B
37 48Right-handed alpha
Helix 14
AB5
B
66 73Right-handed alpha
Helix 15
AB6
B
79 83Right-handed 310
Helix 16
AB7
B
97 101Right-handed 310
Helix 17
AB8
B
102 114Right-handed alpha
Helix 18
AB9
B
114 129Right-handed alpha
Helix 19
AC1
B
144 148Right-handed 310
Helix 20
AC2
B
154 176Right-handed alpha
Helix 21
AC3
B
192 196Right-handed 310
Helix 22
AC4
B
211 224Right-handed alpha
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There are 2 sheets in PDB entry 5MLN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
30 35parallel
Strand 3
A
6 10parallel
Strand 4
A
85 88parallel
Strand 5
A
137 142parallel
Strand 6
A
180 187parallel
Strand 7
A
232 235parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
30 35parallel
Strand 3
B
6 10parallel
Strand 4
B
85 88parallel
Strand 5
B
137 142parallel
Strand 6
B
180 187parallel
Strand 7
B
232 235parallel
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