Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MLR entry

There is 1 chain in PDB entry 5MLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26PRO 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5MLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
111 134Right-handed alpha
Helix 5
AA5
A
146 151Right-handed alpha
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
A
177 191Right-handed alpha
Helix 8
AA8
A
216 232Right-handed alpha
Helix 9
AA9
A
240 246Right-handed alpha
Helix 10
AB1
A
253 266Right-handed alpha
Helix 11
AB2
A
267 270Right-handed 310
Helix 12
AB3
A
283 296Right-handed alpha
Helix 13
AB4
A
309 314Right-handed alpha
Helix 14
AB5
A
317 329Right-handed alpha
Helix 15
AB6
A
334 339Right-handed alpha
Helix 16
AB7
A
340 349Right-handed alpha
Helix 17
AB8
A
357 363Right-handed alpha
Helix 18
AB9
A
370 385Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5MLR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
56 62parallel
Strand 3
A
27 32parallel
Strand 4
A
100 103parallel
Strand 5
A
139 143parallel
Strand 6
A
197 203parallel
Strand 7
A
272 276parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
251 252parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il