Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MLX entry

There are 2 chains in PDB entry 5MLX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 343
B
 LEU 1TYR 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5MLX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 58Right-handed 310
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
A
94 99Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
107 126Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
151 153Right-handed 310
Helix 8
AA8
A
170 175Right-handed alpha
Helix 9
AA9
A
181 185Right-handed 310
Helix 10
AB1
A
220 222Right-handed 310
Helix 11
AB2
A
223 228Right-handed alpha
Helix 12
AB3
A
238 242Right-handed 310
Helix 13
AB4
A
247 251Right-handed 310
Helix 14
AB5
A
254 258Right-handed 310
Helix 15
AB6
A
281 288Right-handed alpha
Helix 16
AB7
A
296 301Right-handed 310
Helix 17
AB8
A
307 312Right-handed alpha
Helix 18
AB9
A
313 323Right-handed alpha
Helix 19
AC1
A
326 332Right-handed 310
Helix 20
AC2
B
52 58Right-handed 310
Helix 21
AC3
B
72 80Right-handed alpha
Helix 22
AC4
B
94 99Right-handed alpha
Helix 23
AC5
B
100 104Right-handed 310
Helix 24
AC6
B
107 126Right-handed alpha
Helix 25
AC7
B
136 150Right-handed alpha
Helix 26
AC8
B
151 153Right-handed 310
Helix 27
AC9
B
170 175Right-handed alpha
Helix 28
AD1
B
181 185Right-handed 310
Helix 29
AD2
B
220 222Right-handed 310
Helix 30
AD3
B
223 228Right-handed alpha
Helix 31
AD4
B
238 242Right-handed 310
Helix 32
AD5
B
247 251Right-handed 310
Helix 33
AD6
B
254 258Right-handed 310
Helix 34
AD7
B
307 312Right-handed alpha
Helix 35
AD8
B
313 323Right-handed alpha
Helix 36
AD9
B
326 332Right-handed 310
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There are 4 sheets in PDB entry 5MLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
30 32parallel
Strand 3
A
87 90anti-parallel
Strand 4
A
43 46parallel
Strand 5
A
130 135parallel
Strand 6
A
155 161parallel
Strand 7
A
232 237parallel
Strand 8
A
268 273parallel
Strand 9
A
340 341anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
206 208anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
30 32parallel
Strand 3
B
87 90anti-parallel
Strand 4
B
43 46parallel
Strand 5
B
130 135parallel
Strand 6
B
155 161parallel
Strand 7
B
232 237parallel
Strand 8
B
268 273parallel
Strand 9
B
340 341anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
206 208anti-parallel
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