Analysis of interatomic Contacts of Structural Units in PDB entry:
5MM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MM0 entry

There is 1 chain in PDB entry 5MM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -2THR 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5MM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
68 80Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 108Right-handed alpha
Helix 7
AA7
A
128 146Right-handed alpha
Helix 8
AA8
A
147 150Right-handed 310
Helix 9
AA9
A
165 168Right-handed 310
Helix 10
AB1
A
178 187Right-handed alpha
Helix 11
AB2
A
212 228Right-handed alpha
Helix 12
AB3
A
229 257Right-handed alpha
Helix 13
AB4
A
261 284Right-handed alpha
Helix 14
AB5
A
286 290Right-handed 310
Helix 15
AB6
A
293 322Right-handed alpha
Helix 16
AB7
A
325 348Right-handed alpha
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There are 2 sheets in PDB entry 5MM0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
32 38parallel
Strand 3
A
3 9parallel
Strand 4
A
84 87parallel
Strand 5
A
160 163anti-parallel
Strand 6
A
112 116anti-parallel
Strand 7
A
192 196parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
198 199parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il