Analysis of interatomic Contacts of Structural Units in PDB entry:
5MM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MM2 entry

There are 3 chains in PDB entry 5MM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1HIS 364
B
 ASP 2ASP 242
C
 MET 1PRO 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5MM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 45Right-handed 310
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
130 138Right-handed alpha
Helix 4
AA4
A
142 146Right-handed 310
Helix 5
AA5
A
199 203Right-handed 310
Helix 6
AA6
A
299 309Right-handed alpha
Helix 7
AA7
A
318 332Right-handed alpha
Helix 8
AA8
A
343 346Right-handed 310
Helix 9
AA9
A
354 360Right-handed alpha
Helix 10
AB1
B
12 16Right-handed 310
Helix 11
AB2
B
52 56Right-handed 310
Helix 12
AB3
B
95 99Right-handed 310
Helix 13
AB4
B
170 175Right-handed alpha
Helix 14
AB5
B
231 235Right-handed 310
Helix 15
AB6
C
27 31Right-handed 310
Helix 16
AB7
C
109 117Right-handed alpha
Helix 17
AB8
C
238 242Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 5MM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
101 109anti-parallel
Strand 4
A
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
101 109anti-parallel
Strand 4
A
212 217anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
150 152anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
270 275anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
339 341anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
204 208anti-parallel
Strand 3
B
116 120anti-parallel
Strand 4
B
150 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
185 196anti-parallel
Strand 3
B
127 134anti-parallel
Strand 4
B
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
158 160anti-parallel
Strand 3
C
140 145anti-parallel
Strand 4
C
195 202anti-parallel
Strand 5
C
102 104anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 49first strand
Strand 2
C
58 62anti-parallel
Strand 3
C
167 172parallel
Strand 4
C
126 131anti-parallel
Strand 5
C
213 220anti-parallel
Strand 6
C
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
224 228anti-parallel
Strand 3
C
119 123anti-parallel
Strand 4
C
181 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il