Analysis of interatomic Contacts of Structural Units in PDB entry:
5MM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MM9 entry

There are 2 chains in PDB entry 5MM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30SER 297
B
 GLU 30ARG 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5MM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
88 104Right-handed alpha
Helix 3
AA3
A
118 123Right-handed alpha
Helix 4
AA4
A
124 131Right-handed alpha
Helix 5
AA5
A
139 150Right-handed alpha
Helix 6
AA6
A
221 223Right-handed 310
Helix 7
AA7
A
241 253Right-handed alpha
Helix 8
AA8
A
280 295Right-handed alpha
Helix 9
AA9
B
33 37Right-handed 310
Helix 10
AB1
B
88 104Right-handed alpha
Helix 11
AB2
B
118 123Right-handed alpha
Helix 12
AB3
B
124 131Right-handed alpha
Helix 13
AB4
B
139 150Right-handed alpha
Helix 14
AB5
B
221 223Right-handed 310
Helix 15
AB6
B
241 253Right-handed alpha
Helix 16
AB7
B
280 295Right-handed alpha
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There are 4 sheets in PDB entry 5MM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
52 61anti-parallel
Strand 3
A
64 76anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
109 113parallel
Strand 6
A
135 138parallel
Strand 7
A
170 171parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
216 220anti-parallel
Strand 5
A
258 261parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 49first strand
Strand 2
B
52 61anti-parallel
Strand 3
B
64 76anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
109 113parallel
Strand 6
B
135 138parallel
Strand 7
B
170 171parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
187 191anti-parallel
Strand 3
B
202 205anti-parallel
Strand 4
B
216 220anti-parallel
Strand 5
B
258 261parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il