Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MMH entry

There are 4 chains in PDB entry 5MMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 93	GLU 298
B	ASP 94	GLU 298
C	ASP 94	HIS 299
D	TYR 92	GLU 298

There are 35 helices in PDB entry 5MMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	108	Right-handed alpha
Helix 2	AA2	A	108	120	Right-handed alpha
Helix 3	AA3	A	135	140	Right-handed alpha
Helix 4	AA4	A	170	176	Right-handed alpha
Helix 5	AA5	A	179	186	Right-handed 310
Helix 6	AA6	A	195	204	Right-handed alpha
Helix 7	AA7	A	220	230	Right-handed alpha
Helix 8	AA8	A	242	248	Right-handed alpha
Helix 9	AA9	A	275	298	Right-handed alpha
Helix 10	AB1	B	102	108	Right-handed alpha
Helix 11	AB2	B	109	120	Right-handed alpha
Helix 12	AB3	B	135	140	Right-handed alpha
Helix 13	AB4	B	170	177	Right-handed alpha
Helix 14	AB5	B	179	186	Right-handed 310
Helix 15	AB6	B	195	204	Right-handed alpha
Helix 16	AB7	B	220	230	Right-handed alpha
Helix 17	AB8	B	242	248	Right-handed alpha
Helix 18	AB9	B	275	298	Right-handed alpha
Helix 19	AC1	C	102	108	Right-handed alpha
Helix 20	AC2	C	108	120	Right-handed alpha
Helix 21	AC3	C	170	176	Right-handed alpha
Helix 22	AC4	C	179	186	Right-handed 310
Helix 23	AC5	C	195	205	Right-handed alpha
Helix 24	AC6	C	220	230	Right-handed alpha
Helix 25	AC7	C	242	248	Right-handed alpha
Helix 26	AC8	C	275	297	Right-handed alpha
Helix 27	AC9	D	102	108	Right-handed alpha
Helix 28	AD1	D	109	120	Right-handed alpha
Helix 29	AD2	D	135	140	Right-handed alpha
Helix 30	AD3	D	170	177	Right-handed alpha
Helix 31	AD4	D	179	186	Right-handed 310
Helix 32	AD5	D	195	203	Right-handed alpha
Helix 33	AD6	D	220	230	Right-handed alpha
Helix 34	AD7	D	242	248	Right-handed alpha
Helix 35	AD8	D	275	298	Right-handed alpha

There are 11 sheets in PDB entry 5MMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	130	first strand
Strand 2	A	95	101	parallel
Strand 3	A	143	148	parallel
Strand 4	A	263	269	anti-parallel
Strand 5	A	155	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	235	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	215	218	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	130	first strand
Strand 2	B	95	101	parallel
Strand 3	B	143	148	parallel
Strand 4	B	263	269	anti-parallel
Strand 5	B	155	162	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	168	first strand
Strand 2	B	235	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	216	218	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	96	101	parallel
Strand 3	C	143	148	parallel
Strand 4	C	263	269	anti-parallel
Strand 5	C	155	162	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	235	238	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	216	218	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	130	first strand
Strand 2	D	95	101	parallel
Strand 3	D	143	148	parallel
Strand 4	D	263	269	anti-parallel
Strand 5	D	155	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	234	238	anti-parallel
Strand 3	D	188	191	parallel
Strand 4	D	217	218	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMH