Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MMI entry

There are 35 chains in PDB entry 5MMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ARG 37	TYR 80
1	ALA 2	ARG 49
2	ASP 6	LYS 65
3	LYS 93	PRO 152
4	LYS 88	VAL 159
5	MET 1	GLY 37
6	SER 94	VAL 142
7	SER 48	SER 93
A	U 2	A 2810
B	U 1	U 121
C	GLN 19	SER 271
D	SER 85	ASN 305
E	GLU 51	ASP 262
F	ALA 39	ARG 231
G	LYS 39	ALA 216
H	GLN 42	PRO 89
I	ALA 53	PHE 189
J	VAL 79	ASP 211
K	ARG 48	LYS 250
L	MET 1	LEU 121
M	THR 78	ALA 262
N	MET 1	GLY 135
O	MET 11	VAL 126
P	LYS 45	PHE 166
Q	ARG 116	LYS 233
R	THR 2	ASP 120
S	LEU 68	ALA 237
T	PRO 24	ARG 195
U	LYS 100	PRO 195
V	ARG 48	LYS 181
W	A 1	C 106
X	THR 66	PHE 174
Y	ARG 72	GLU 148
Z	VAL 59	ALA 159
z	C 75	A 76

There are120 helices in PDB entry 5MMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	9	39	Right-handed alpha
Helix 2	AA2	3	95	100	Right-handed 310
Helix 3	AA3	3	104	110	Right-handed alpha
Helix 4	AA4	3	113	118	Right-handed alpha
Helix 5	AA5	3	120	134	Right-handed alpha
Helix 6	AA6	4	95	100	Right-handed alpha
Helix 7	AA7	4	125	132	Right-handed alpha
Helix 8	AA8	4	139	141	Right-handed 310
Helix 9	AA9	4	142	150	Right-handed alpha
Helix 10	AB1	5	29	32	Right-handed 310
Helix 11	AB2	6	95	129	Right-handed alpha
Helix 12	AB3	6	132	140	Right-handed alpha
Helix 13	AB4	7	55	63	Right-handed alpha
Helix 14	AB5	7	68	73	Right-handed alpha
Helix 15	AB6	C	193	199	Right-handed 310
Helix 16	AB7	C	203	209	Right-handed alpha
Helix 17	AB8	C	217	221	Right-handed 310
Helix 18	AB9	C	260	264	Right-handed 310
Helix 19	AC1	D	128	133	Right-handed alpha
Helix 20	AC2	D	150	159	Right-handed alpha
Helix 21	AC3	D	186	191	Right-handed alpha
Helix 22	AC4	D	210	216	Right-handed alpha
Helix 23	AC5	E	79	95	Right-handed alpha
Helix 24	AC6	E	153	168	Right-handed alpha
Helix 25	AC7	E	169	171	Right-handed 310
Helix 26	AC8	E	178	182	Right-handed 310
Helix 27	AC9	E	186	197	Right-handed alpha
Helix 28	AD1	E	213	222	Right-handed alpha
Helix 29	AD2	E	235	242	Right-handed alpha
Helix 30	AD3	E	249	259	Right-handed alpha
Helix 31	AD4	F	52	64	Right-handed alpha
Helix 32	AD5	F	64	74	Right-handed alpha
Helix 33	AD6	F	77	81	Right-handed 310
Helix 34	AD7	F	94	98	Right-handed 310
Helix 35	AD8	F	99	115	Right-handed alpha
Helix 36	AD9	F	146	158	Right-handed alpha
Helix 37	AE1	F	215	226	Right-handed alpha
Helix 38	AE2	G	41	46	Right-handed alpha
Helix 39	AE3	G	98	121	Right-handed alpha
Helix 40	AE4	G	177	191	Right-handed alpha
Helix 41	AE5	H	70	77	Right-handed alpha
Helix 42	AE6	H	78	82	Right-handed 310
Helix 43	AE7	I	55	72	Right-handed alpha
Helix 44	AE8	I	85	100	Right-handed alpha
Helix 45	AE9	I	106	117	Right-handed alpha
Helix 46	AF1	I	119	127	Right-handed 310
Helix 47	AF2	I	139	154	Right-handed alpha
Helix 48	AF3	I	176	182	Right-handed alpha
Helix 49	AF4	I	184	189	Right-handed alpha
Helix 50	AF5	J	95	101	Right-handed alpha
Helix 51	AF6	J	105	120	Right-handed alpha
Helix 52	AF7	J	145	154	Right-handed alpha
Helix 53	AF8	J	172	183	Right-handed alpha
Helix 54	AF9	J	184	187	Right-handed 310
Helix 55	AG1	J	191	207	Right-handed alpha
Helix 56	AG2	K	52	73	Right-handed alpha
Helix 57	AG3	K	88	92	Right-handed 310
Helix 58	AG4	K	103	108	Right-handed alpha
Helix 59	AG5	K	109	112	Right-handed 310
Helix 60	AG6	K	123	137	Right-handed alpha
Helix 61	AG7	K	166	171	Right-handed alpha
Helix 62	AG8	K	188	195	Right-handed alpha
Helix 63	AG9	K	196	206	Right-handed alpha
Helix 64	AH1	K	211	219	Right-handed alpha
Helix 65	AH2	K	231	235	Right-handed 310
Helix 66	AH3	L	103	107	Right-handed 310
Helix 67	AH4	L	110	117	Right-handed alpha
Helix 68	AH5	M	116	120	Right-handed 310
Helix 69	AH6	M	145	149	Right-handed 310
Helix 70	AH7	M	162	168	Right-handed alpha
Helix 71	AH8	M	178	184	Right-handed alpha
Helix 72	AH9	M	190	196	Right-handed alpha
Helix 73	AI1	M	218	229	Right-handed alpha
Helix 74	AI2	M	243	262	Right-handed alpha
Helix 75	AI3	N	44	59	Right-handed alpha
Helix 76	AI4	N	110	123	Right-handed alpha
Helix 77	AI5	O	23	42	Right-handed alpha
Helix 78	AI6	O	48	68	Right-handed alpha
Helix 79	AI7	O	69	78	Right-handed alpha
Helix 80	AI8	O	82	97	Right-handed alpha
Helix 81	AI9	P	48	64	Right-handed alpha
Helix 82	AJ1	P	102	109	Right-handed alpha
Helix 83	AJ2	P	116	133	Right-handed alpha
Helix 84	AJ3	P	149	162	Right-handed alpha
Helix 85	AJ4	Q	118	138	Right-handed alpha
Helix 86	AJ5	Q	175	178	Right-handed 310
Helix 87	AJ6	Q	226	231	Right-handed 310
Helix 88	AJ7	R	8	19	Right-handed alpha
Helix 89	AJ8	R	25	29	Right-handed 310
Helix 90	AJ9	R	31	71	Right-handed alpha
Helix 91	AK1	R	77	88	Right-handed alpha
Helix 92	AK2	R	93	104	Right-handed alpha
Helix 93	AK3	R	104	120	Right-handed alpha
Helix 94	AK4	S	69	77	Right-handed alpha
Helix 95	AK5	S	84	89	Right-handed alpha
Helix 96	AK6	S	100	111	Right-handed alpha
Helix 97	AK7	T	25	30	Right-handed alpha
Helix 98	AK8	T	42	54	Right-handed alpha
Helix 99	AK9	T	57	68	Right-handed alpha
Helix 100	AL1	T	72	90	Right-handed alpha
Helix 101	AL2	T	94	96	Right-handed 310
Helix 102	AL3	T	118	120	Right-handed 310
Helix 103	AL4	T	142	152	Right-handed alpha
Helix 104	AL5	T	153	161	Right-handed alpha
Helix 105	AL6	T	165	173	Right-handed alpha
Helix 106	AL7	T	176	181	Right-handed alpha
Helix 107	AL8	T	183	188	Right-handed alpha
Helix 108	AL9	U	110	113	Right-handed 310
Helix 109	AM1	U	121	132	Right-handed alpha
Helix 110	AM2	U	143	155	Right-handed alpha
Helix 111	AM3	U	183	192	Right-handed alpha
Helix 112	AM4	V	173	180	Right-handed alpha
Helix 113	AM5	X	149	168	Right-handed alpha
Helix 114	AM6	Y	123	133	Right-handed alpha
Helix 115	AM7	Y	133	142	Right-handed alpha
Helix 116	AM8	Z	60	70	Right-handed alpha
Helix 117	AM9	Z	72	97	Right-handed alpha
Helix 118	AN1	Z	102	127	Right-handed alpha
Helix 119	AN2	Z	129	144	Right-handed alpha
Helix 120	AN3	Z	153	159	Right-handed alpha

There are 45 sheets in PDB entry 5MMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	57	61	first strand
Strand 2	49	53	anti-parallel
Strand 3	67	70	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	46	47	first strand
Strand 2	O	105	110	parallel
Strand 3	O	120	125	anti-parallel
Strand 4	O	43	47	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	38	first strand
Strand 2	2	8	15	anti-parallel
Strand 3	2	58	63	anti-parallel
Strand 4	2	48	51	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	103	104	first strand
Strand 2	4	110	112	anti-parallel
Strand 3	4	136	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	2	4	first strand
Strand 2	5	34	36	parallel
Strand 3	5	22	26	anti-parallel
Strand 4	5	15	19	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	89	92	first strand
Strand 2	S	155	158	anti-parallel
Strand 3	S	181	191	anti-parallel
Strand 4	S	215	225	anti-parallel
Strand 5	S	141	145	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	58	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	87	91	anti-parallel
Strand 3	C	71	78	anti-parallel
Strand 4	C	111	113	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	185	188	anti-parallel
Strand 3	C	136	138	anti-parallel
Strand 4	C	158	164	anti-parallel
Strand 5	C	167	171	anti-parallel
Strand 6	C	177	181	anti-parallel
Strand 7	C	266	268	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	103	first strand
Strand 2	D	109	116	anti-parallel
Strand 3	D	275	279	anti-parallel
Strand 4	D	258	270	anti-parallel
Strand 5	D	196	202	anti-parallel
Strand 6	D	290	294	anti-parallel
Strand 7	D	92	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	127	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	168	172	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	252	253	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	68	first strand
Strand 2	E	55	58	anti-parallel
Strand 3	E	173	175	parallel
Strand 4	E	244	248	parallel
Strand 5	E	205	208	parallel
Strand 6	E	226	229	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	145	first strand
Strand 2	F	84	91	anti-parallel
Strand 3	F	205	211	anti-parallel
Strand 4	F	181	185	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	89	94	anti-parallel
Strand 3	G	80	84	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	59	first strand
Strand 2	G	62	67	anti-parallel
Strand 3	G	70	75	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	166	first strand
Strand 2	G	170	175	anti-parallel
Strand 3	G	123	130	anti-parallel
Strand 4	G	201	204	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	142	146	anti-parallel
Strand 3	G	153	156	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	69	first strand
Strand 2	H	49	53	anti-parallel
Strand 3	H	84	86	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	104	first strand
Strand 2	I	131	134	anti-parallel
Strand 3	I	75	81	anti-parallel
Strand 4	I	159	166	anti-parallel
Strand 5	I	169	171	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	84	first strand
Strand 2	J	125	131	anti-parallel
Strand 3	J	137	141	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	170	171	first strand
Strand 2	J	209	210	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	221	223	first strand
Strand 2	K	152	156	parallel
Strand 3	K	114	118	parallel
Strand 4	K	237	238	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	176	first strand
Strand 2	K	183	187	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	10	first strand
Strand 2	L	16	25	anti-parallel
Strand 3	L	38	46	anti-parallel
Strand 4	L	57	64	anti-parallel
Strand 5	L	83	87	anti-parallel
Strand 6	L	7	10	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	76	79	anti-parallel
Strand 3	Q	190	197	anti-parallel
Strand 4	Q	180	187	anti-parallel
Strand 5	Q	163	173	anti-parallel
Strand 6	Q	147	153	anti-parallel
Strand 7	Q	203	211	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	101	102	first strand
Strand 2	L	119	120	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	158	161	first strand
Strand 2	M	198	201	parallel
Strand 3	M	216	217	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	211	214	first strand
Strand 2	M	231	234	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	66	first strand
Strand 2	N	102	107	anti-parallel
Strand 3	N	32	36	anti-parallel
Strand 4	N	129	133	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	43	first strand
Strand 2	N	89	97	anti-parallel
Strand 3	N	72	76	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	93	99	first strand
Strand 2	P	81	88	anti-parallel
Strand 3	P	72	78	anti-parallel
Strand 4	P	140	142	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	132	136	first strand
Strand 2	S	124	129	anti-parallel
Strand 3	S	161	165	anti-parallel
Strand 4	S	170	172	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	195	201	first strand
Strand 2	S	206	212	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	39	first strand
Strand 2	T	130	138	anti-parallel
Strand 3	T	98	107	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	111	116	first strand
Strand 2	T	122	127	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	115	118	first strand
Strand 2	U	133	138	anti-parallel
Strand 3	U	172	177	anti-parallel
Strand 4	U	161	166	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	130	131	first strand
Strand 2	V	99	102	anti-parallel
Strand 3	V	87	94	anti-parallel
Strand 4	V	75	78	anti-parallel
Strand 5	V	135	139	anti-parallel
Strand 6	V	144	146	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	107	115	first strand
Strand 2	V	119	127	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	148	153	first strand
Strand 2	V	157	162	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	78	79	first strand
Strand 2	X	92	95	anti-parallel
Strand 3	X	115	117	anti-parallel
Strand 4	X	107	109	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	86	87	first strand
Strand 2	X	121	127	anti-parallel
Strand 3	X	133	138	anti-parallel
Strand 4	X	102	103	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	83	84	first strand
Strand 2	Y	98	99	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	87	88	first strand
Strand 2	Y	94	95	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	103	110	first strand
Strand 2	Y	115	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMI