Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MMJ entry

There are 27 chains in PDB entry 5MMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ASP 92	GLY 102
8	UNK 1001	UNK 1263
a	U 1	C 1484
b	ARG 4	PRO 236
c	GLY 2	GLU 217
d	SER 2	GLN 200
e	LEU 122	LYS 308
f	PRO 99	TYR 211
g	SER 2	ARG 155
h	GLY 2	TRP 134
i	ASP 65	ARG 208
j	GLN 97	LEU 195
k	ALA 22	VAL 138
l	PRO 2	LYS 123
m	VAL 48	GLY 157
n	ALA 2	TRP 100
o	GLU 16	ARG 90
p	MET 1	PHE 80
q	MET 58	PRO 143
r	PRO 21	ASN 80
s	LYS 6	HIS 83
t	THR 72	LEU 178
u	SER 82	GLY 146
v	GLU 181	ALA 260
w	LYS 92	SER 173
x	GLY 55	GLY 94
y	TRP 68	LYS 183

There are102 helices in PDB entry 5MMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	93	101	Right-handed alpha
Helix 2	AA2	8	1039	1043	Right-handed 310
Helix 3	AA3	8	1102	1126	Right-handed alpha
Helix 4	AA4	8	1134	1141	Right-handed alpha
Helix 5	AA5	8	1221	1230	Right-handed alpha
Helix 6	AA6	8	1237	1245	Right-handed alpha
Helix 7	AA7	8	1246	1258	Right-handed alpha
Helix 8	AA8	b	9	17	Right-handed alpha
Helix 9	AA9	b	28	32	Right-handed 310
Helix 10	AB1	b	46	68	Right-handed alpha
Helix 11	AB2	b	77	92	Right-handed alpha
Helix 12	AB3	b	107	128	Right-handed alpha
Helix 13	AB4	b	134	153	Right-handed alpha
Helix 14	AB5	b	173	184	Right-handed alpha
Helix 15	AB6	b	210	235	Right-handed alpha
Helix 16	AB7	c	6	11	Right-handed alpha
Helix 17	AB8	c	25	52	Right-handed alpha
Helix 18	AB9	c	90	103	Right-handed alpha
Helix 19	AC1	c	123	137	Right-handed alpha
Helix 20	AC2	c	140	155	Right-handed alpha
Helix 21	AC3	c	168	171	Right-handed 310
Helix 22	AC4	d	7	16	Right-handed alpha
Helix 23	AC5	d	42	59	Right-handed alpha
Helix 24	AC6	d	61	75	Right-handed alpha
Helix 25	AC7	d	78	89	Right-handed alpha
Helix 26	AC8	d	90	98	Right-handed alpha
Helix 27	AC9	d	103	113	Right-handed alpha
Helix 28	AD1	d	141	154	Right-handed alpha
Helix 29	AD2	d	180	184	Right-handed 310
Helix 30	AD3	d	189	197	Right-handed alpha
Helix 31	AD4	d	198	200	Right-handed 310
Helix 32	AD5	e	124	136	Right-handed alpha
Helix 33	AD6	e	146	150	Right-handed 310
Helix 34	AD7	e	196	212	Right-handed alpha
Helix 35	AD8	e	250	261	Right-handed alpha
Helix 36	AD9	e	274	288	Right-handed alpha
Helix 37	AE1	e	291	300	Right-handed alpha
Helix 38	AE2	e	302	308	Right-handed alpha
Helix 39	AE3	f	119	137	Right-handed alpha
Helix 40	AE4	f	184	195	Right-handed alpha
Helix 41	AE5	g	20	30	Right-handed alpha
Helix 42	AE6	g	35	54	Right-handed alpha
Helix 43	AE7	g	57	70	Right-handed alpha
Helix 44	AE8	g	92	110	Right-handed alpha
Helix 45	AE9	g	115	129	Right-handed alpha
Helix 46	AF1	g	132	147	Right-handed alpha
Helix 47	AF2	g	148	152	Right-handed 310
Helix 48	AF3	h	4	19	Right-handed alpha
Helix 49	AF4	h	29	43	Right-handed alpha
Helix 50	AF5	h	92	96	Right-handed 310
Helix 51	AF6	h	99	103	Right-handed 310
Helix 52	AF7	h	116	124	Right-handed alpha
Helix 53	AF8	i	66	74	Right-handed alpha
Helix 54	AF9	i	112	116	Right-handed alpha
Helix 55	AG1	i	119	132	Right-handed alpha
Helix 56	AG2	i	149	169	Right-handed alpha
Helix 57	AG3	i	172	180	Right-handed alpha
Helix 58	AG4	j	107	125	Right-handed alpha
Helix 59	AG5	j	173	182	Right-handed alpha
Helix 60	AG6	k	64	67	Right-handed 310
Helix 61	AG7	k	68	86	Right-handed alpha
Helix 62	AG8	k	100	112	Right-handed alpha
Helix 63	AG9	l	3	8	Right-handed alpha
Helix 64	AH1	l	21	25	Right-handed 310
Helix 65	AH2	l	113	118	Right-handed alpha
Helix 66	AH3	m	50	54	Right-handed 310
Helix 67	AH4	m	60	66	Right-handed alpha
Helix 68	AH5	m	73	83	Right-handed alpha
Helix 69	AH6	m	94	106	Right-handed alpha
Helix 70	AH7	m	110	129	Right-handed alpha
Helix 71	AH8	m	130	139	Right-handed alpha
Helix 72	AH9	m	151	156	Right-handed alpha
Helix 73	AI1	n	3	34	Right-handed alpha
Helix 74	AI2	n	36	48	Right-handed alpha
Helix 75	AI3	n	51	59	Right-handed 310
Helix 76	AI4	n	79	89	Right-handed alpha
Helix 77	AI5	o	21	43	Right-handed alpha
Helix 78	AI6	o	46	71	Right-handed alpha
Helix 79	AI7	o	71	82	Right-handed alpha
Helix 80	AI8	p	49	59	Right-handed alpha
Helix 81	AI9	p	64	74	Right-handed alpha
Helix 82	AJ1	p	75	80	Right-handed alpha
Helix 83	AJ2	q	102	105	Right-handed 310
Helix 84	AJ3	r	32	39	Right-handed alpha
Helix 85	AJ4	r	48	53	Right-handed alpha
Helix 86	AJ5	r	55	72	Right-handed alpha
Helix 87	AJ6	s	12	25	Right-handed alpha
Helix 88	AJ7	s	63	67	Right-handed 310
Helix 89	AJ8	s	71	75	Right-handed 310
Helix 90	AJ9	t	76	117	Right-handed alpha
Helix 91	AK1	t	120	145	Right-handed alpha
Helix 92	AK2	t	149	172	Right-handed alpha
Helix 93	AK3	u	95	111	Right-handed alpha
Helix 94	AK4	u	111	119	Right-handed alpha
Helix 95	AK5	u	124	146	Right-handed alpha
Helix 96	AK6	v	196	204	Right-handed alpha
Helix 97	AK7	v	234	245	Right-handed alpha
Helix 98	AK8	w	136	148	Right-handed alpha
Helix 99	AK9	w	152	173	Right-handed alpha
Helix 100	AL1	x	61	69	Right-handed alpha
Helix 101	AL2	y	87	106	Right-handed alpha
Helix 102	AL3	y	152	177	Right-handed alpha

There are 27 sheets in PDB entry 5MMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	1002	1010	first strand
Strand 2	8	1014	1018	anti-parallel
Strand 3	8	1024	1028	anti-parallel
Strand 4	8	1063	1067	parallel
Strand 5	8	1049	1058	anti-parallel
Strand 6	8	1002	1010	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	1205	1207	first strand
Strand 2	b	35	39	anti-parallel
Strand 3	b	42	45	anti-parallel
Strand 4	b	20	23	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	94	96	first strand
Strand 2	b	71	74	parallel
Strand 3	b	164	167	parallel
Strand 4	b	187	191	parallel
Strand 5	b	202	205	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	60	67	first strand
Strand 2	c	71	78	anti-parallel
Strand 3	c	109	116	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	175	182	first strand
Strand 2	c	159	166	anti-parallel
Strand 3	c	205	214	anti-parallel
Strand 4	c	193	202	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	116	118	first strand
Strand 2	d	134	138	anti-parallel
Strand 3	d	173	175	anti-parallel
Strand 4	d	164	166	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	153	165	first strand
Strand 2	e	170	181	anti-parallel
Strand 3	e	186	194	anti-parallel
Strand 4	e	213	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	227	231	first strand
Strand 2	e	234	240	anti-parallel
Strand 3	e	265	271	anti-parallel
Strand 4	e	247	248	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	140	147	first strand
Strand 2	f	172	180	anti-parallel
Strand 3	f	106	114	anti-parallel
Strand 4	f	198	205	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	156	159	first strand
Strand 2	f	165	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	76	80	first strand
Strand 2	g	83	87	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	23	27	first strand
Strand 2	h	56	62	anti-parallel
Strand 3	h	47	53	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	79	81	first strand
Strand 2	h	127	133	anti-parallel
Strand 3	h	90	91	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	79	81	first strand
Strand 2	h	127	133	anti-parallel
Strand 3	h	105	110	anti-parallel
Strand 4	h	113	115	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	84	89	first strand
Strand 2	i	92	100	anti-parallel
Strand 3	i	139	146	anti-parallel
Strand 4	i	105	107	parallel
Strand 5	i	110	111	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	129	145	first strand
Strand 2	j	155	169	anti-parallel
Strand 3	j	99	105	anti-parallel
Strand 4	j	189	194	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	129	145	first strand
Strand 2	j	155	169	anti-parallel
Strand 3	n	95	97	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	49	55	first strand
Strand 2	k	39	45	anti-parallel
Strand 3	k	27	34	anti-parallel
Strand 4	k	90	96	parallel
Strand 5	k	115	121	parallel
Strand 6	u	86	89	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	29	40	first strand
Strand 2	l	50	57	anti-parallel
Strand 3	l	62	66	anti-parallel
Strand 4	l	95	97	parallel
Strand 5	l	79	84	anti-parallel
Strand 6	l	29	40	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	46	47	first strand
Strand 2	p	34	39	anti-parallel
Strand 3	p	14	23	anti-parallel
Strand 4	p	2	11	anti-parallel
Strand 5	p	62	63	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	61	67	first strand
Strand 2	q	73	83	anti-parallel
Strand 3	q	90	100	anti-parallel
Strand 4	q	126	129	parallel
Strand 5	q	111	116	anti-parallel
Strand 6	q	61	67	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	31	33	first strand
Strand 2	s	48	52	parallel
Strand 3	s	57	61	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	210	217	first strand
Strand 2	v	224	232	anti-parallel
Strand 3	v	185	189	anti-parallel
Strand 4	v	256	259	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	249	250	first strand
Strand 2	v	253	254	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	98	105	first strand
Strand 2	w	110	118	anti-parallel
Strand 3	w	122	125	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	98	105	first strand
Strand 2	w	110	118	anti-parallel
Strand 3	w	130	132	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	76	81	first strand
Strand 2	y	109	119	parallel
Strand 3	y	129	138	anti-parallel
Strand 4	y	144	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMJ