Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MMQ entry

There are 2 chains in PDB entry 5MMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 17SER 206
B
 THR 19SER 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5MMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
35 50Right-handed alpha
Helix 3
AA3
A
70 79Right-handed alpha
Helix 4
AA4
A
83 87Right-handed 310
Helix 5
AA5
A
181 205Right-handed alpha
Helix 6
AA6
B
25 29Right-handed 310
Helix 7
AA7
B
35 50Right-handed alpha
Helix 8
AA8
B
70 79Right-handed alpha
Helix 9
AA9
B
83 87Right-handed 310
Helix 10
AB1
B
181 205Right-handed alpha
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There are 2 sheets in PDB entry 5MMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 67first strand
Strand 2
A
163 175anti-parallel
Strand 3
A
150 160anti-parallel
Strand 4
A
134 141anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
107 112anti-parallel
Strand 7
A
91 95anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 67first strand
Strand 2
B
163 175anti-parallel
Strand 3
B
150 160anti-parallel
Strand 4
B
134 141anti-parallel
Strand 5
B
120 129anti-parallel
Strand 6
B
107 112anti-parallel
Strand 7
B
91 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il