Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MMS entry

There are 4 chains in PDB entry 5MMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 44	PHE 396
B	ARG 45	LEU 397
C	ILE 44	LYS 394
D	ARG 45	VAL 320

There are107 helices in PDB entry 5MMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	94	99	Right-handed alpha
Helix 4	AA4	A	111	113	Right-handed 310
Helix 5	AA5	A	118	133	Right-handed alpha
Helix 6	AA6	A	148	162	Right-handed alpha
Helix 7	AA7	A	174	184	Right-handed alpha
Helix 8	AA8	A	202	214	Right-handed alpha
Helix 9	AA9	A	226	235	Right-handed alpha
Helix 10	AB1	A	235	244	Right-handed alpha
Helix 11	AB2	A	258	272	Right-handed alpha
Helix 12	AB3	A	290	294	Right-handed 310
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	327	343	Right-handed alpha
Helix 15	AB6	A	347	361	Right-handed alpha
Helix 16	AB7	A	362	364	Right-handed 310
Helix 17	AB8	A	377	382	Right-handed 310
Helix 18	AB9	A	387	395	Right-handed alpha
Helix 19	AC1	B	59	63	Right-handed 310
Helix 20	AC2	B	79	83	Right-handed 310
Helix 21	AC3	B	94	99	Right-handed alpha
Helix 22	AC4	B	111	113	Right-handed 310
Helix 23	AC5	B	118	133	Right-handed alpha
Helix 24	AC6	B	148	162	Right-handed alpha
Helix 25	AC7	B	174	184	Right-handed alpha
Helix 26	AC8	B	202	214	Right-handed alpha
Helix 27	AC9	B	226	235	Right-handed alpha
Helix 28	AD1	B	235	244	Right-handed alpha
Helix 29	AD2	B	258	272	Right-handed alpha
Helix 30	AD3	B	290	294	Right-handed 310
Helix 31	AD4	B	327	343	Right-handed alpha
Helix 32	AD5	B	347	361	Right-handed alpha
Helix 33	AD6	B	362	364	Right-handed 310
Helix 34	AD7	B	377	382	Right-handed 310
Helix 35	AD8	B	387	394	Right-handed alpha
Helix 36	AD9	C	59	63	Right-handed 310
Helix 37	AE1	C	79	83	Right-handed 310
Helix 38	AE2	C	94	99	Right-handed alpha
Helix 39	AE3	C	111	113	Right-handed 310
Helix 40	AE4	C	118	133	Right-handed alpha
Helix 41	AE5	C	148	162	Right-handed alpha
Helix 42	AE6	C	175	184	Right-handed alpha
Helix 43	AE7	C	202	214	Right-handed alpha
Helix 44	AE8	C	226	235	Right-handed alpha
Helix 45	AE9	C	235	244	Right-handed alpha
Helix 46	AF1	C	258	272	Right-handed alpha
Helix 47	AF2	C	290	294	Right-handed 310
Helix 48	AF3	C	316	320	Right-handed 310
Helix 49	AF4	C	327	343	Right-handed alpha
Helix 50	AF5	C	347	361	Right-handed alpha
Helix 51	AF6	C	362	364	Right-handed 310
Helix 52	AF7	C	377	382	Right-handed 310
Helix 53	AF8	C	387	394	Right-handed alpha
Helix 54	AF9	D	59	63	Right-handed 310
Helix 55	AG1	D	79	83	Right-handed 310
Helix 56	AG2	D	94	99	Right-handed alpha
Helix 57	AG3	D	111	113	Right-handed 310
Helix 58	AG4	D	118	133	Right-handed alpha
Helix 59	AG5	D	148	162	Right-handed alpha
Helix 60	AG6	D	174	184	Right-handed alpha
Helix 61	AG7	D	202	214	Right-handed alpha
Helix 62	AG8	D	226	235	Right-handed alpha
Helix 63	AG9	D	235	244	Right-handed alpha
Helix 64	AH1	D	258	272	Right-handed alpha
Helix 65	AH2	D	290	294	Right-handed 310
Helix 66	AH3	D	316	320	Right-handed 310
Helix 67	AH4	D	327	343	Right-handed alpha
Helix 68	AH5	D	347	361	Right-handed alpha
Helix 69	AH6	D	362	364	Right-handed 310
Helix 70	AH7	D	377	382	Right-handed 310
Helix 71	AH8	D	387	394	Right-handed alpha
Helix 72	AH9	E	59	63	Right-handed 310
Helix 73	AI1	E	79	83	Right-handed 310
Helix 74	AI2	E	94	99	Right-handed alpha
Helix 75	AI3	E	111	113	Right-handed 310
Helix 76	AI4	E	118	133	Right-handed alpha
Helix 77	AI5	E	148	162	Right-handed alpha
Helix 78	AI6	E	174	184	Right-handed alpha
Helix 79	AI7	E	202	214	Right-handed alpha
Helix 80	AI8	E	226	235	Right-handed alpha
Helix 81	AI9	E	235	244	Right-handed alpha
Helix 82	AJ1	E	258	272	Right-handed alpha
Helix 83	AJ2	E	290	294	Right-handed 310
Helix 84	AJ3	E	316	320	Right-handed 310
Helix 85	AJ4	E	327	343	Right-handed alpha
Helix 86	AJ5	E	347	361	Right-handed alpha
Helix 87	AJ6	E	362	364	Right-handed 310
Helix 88	AJ7	E	377	382	Right-handed 310
Helix 89	AJ8	E	387	394	Right-handed alpha
Helix 90	AJ9	F	59	63	Right-handed 310
Helix 91	AK1	F	79	83	Right-handed 310
Helix 92	AK2	F	94	99	Right-handed alpha
Helix 93	AK3	F	111	113	Right-handed 310
Helix 94	AK4	F	118	133	Right-handed alpha
Helix 95	AK5	F	148	162	Right-handed alpha
Helix 96	AK6	F	175	184	Right-handed alpha
Helix 97	AK7	F	203	214	Right-handed alpha
Helix 98	AK8	F	226	235	Right-handed alpha
Helix 99	AK9	F	235	244	Right-handed alpha
Helix 100	AL1	F	258	272	Right-handed alpha
Helix 101	AL2	F	290	295	Right-handed 310
Helix 102	AL3	F	316	320	Right-handed 310
Helix 103	AL4	F	327	341	Right-handed alpha
Helix 104	AL5	F	347	361	Right-handed alpha
Helix 105	AL6	F	362	364	Right-handed 310
Helix 106	AL7	F	377	382	Right-handed 310
Helix 107	AL8	F	387	394	Right-handed alpha

There are 12 sheets in PDB entry 5MMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	369	374	parallel
Strand 4	A	250	254	parallel
Strand 5	A	276	282	parallel
Strand 6	A	322	326	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	164	170	parallel
Strand 3	A	141	145	parallel
Strand 4	A	217	219	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	369	374	parallel
Strand 4	B	250	254	parallel
Strand 5	B	276	282	parallel
Strand 6	B	322	326	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	164	170	parallel
Strand 3	B	141	145	parallel
Strand 4	B	217	219	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	C	369	374	parallel
Strand 4	C	250	254	parallel
Strand 5	C	276	282	parallel
Strand 6	C	322	326	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	164	169	parallel
Strand 3	C	141	145	parallel
Strand 4	C	217	219	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	104	109	anti-parallel
Strand 3	D	369	374	parallel
Strand 4	D	250	254	parallel
Strand 5	D	276	282	parallel
Strand 6	D	322	326	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	164	170	parallel
Strand 3	D	141	145	parallel
Strand 4	D	217	219	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	92	first strand
Strand 2	E	104	109	anti-parallel
Strand 3	E	369	374	parallel
Strand 4	E	250	254	parallel
Strand 5	E	276	282	parallel
Strand 6	E	322	326	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	164	171	parallel
Strand 3	E	141	145	parallel
Strand 4	E	217	219	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	92	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	F	369	374	parallel
Strand 4	F	250	254	parallel
Strand 5	F	276	282	parallel
Strand 6	F	322	326	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	190	first strand
Strand 2	F	164	169	parallel
Strand 3	F	141	145	parallel
Strand 4	F	217	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMS