Analysis of interatomic Contacts of Structural Units in PDB entry:
5MMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MMZ entry

There are 2 chains in PDB entry 5MMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 429LYS 578
B
 ALA 8ARG 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5MMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
429 441Right-handed alpha
Helix 2
AA2
A
445 450Right-handed alpha
Helix 3
AA3
A
454 456Right-handed 310
Helix 4
AA4
A
466 477Right-handed alpha
Helix 5
AA5
A
498 501Right-handed 310
Helix 6
AA6
A
504 508Right-handed 310
Helix 7
AA7
A
511 518Right-handed alpha
Helix 8
AA8
A
530 541Right-handed alpha
Helix 9
AA9
A
569 578Right-handed alpha
Helix 10
AB1
B
29 41Right-handed alpha
Helix 11
AB2
B
55 61Right-handed alpha
Helix 12
AB3
B
77 95Right-handed alpha
Helix 13
AB4
B
109 122Right-handed alpha
Helix 14
AB5
B
125 137Right-handed alpha
Helix 15
AB6
B
142 152Right-handed alpha
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There are 4 sheets in PDB entry 5MMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
560 568anti-parallel
Strand 3
A
545 552anti-parallel
Strand 4
A
523 526parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
480 484parallel
Strand 3
A
491 496anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
509 510anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
99 103parallel
Strand 4
B
42 47parallel
Strand 5
B
64 67parallel
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