Analysis of interatomic Contacts of Structural Units in PDB entry:
5MN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MN2 entry

There are 4 chains in PDB entry 5MN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLY 175
B
 ASP 4GLN 174
C
 SER 13VAL 100
D
 GLU 11VAL 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5MN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 66Right-handed 310
Helix 2
AA2
A
145 149Right-handed 310
Helix 3
AA3
B
62 66Right-handed 310
Helix 4
AA4
B
114 116Right-handed 310
Helix 5
AA5
B
145 149Right-handed 310
Helix 6
AA6
C
15 32Right-handed alpha
Helix 7
AA7
D
13 32Right-handed alpha
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There are 12 sheets in PDB entry 5MN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
55 58anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
82 87parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
40 44anti-parallel
Strand 5
A
47 48anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
139 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
168 173parallel
Strand 3
A
150 158anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
128 135anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
168 173parallel
Strand 3
A
150 158anti-parallel
Strand 4
A
161 164anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
55 58anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
82 87parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
40 44anti-parallel
Strand 5
B
47 48anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
106 112anti-parallel
Strand 3
B
139 141anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
168 173parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
121 125anti-parallel
Strand 5
B
128 133anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
168 173parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
161 164anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 47first strand
Strand 2
C
53 66anti-parallel
Strand 3
C
69 84anti-parallel
Strand 4
C
87 99anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 47first strand
Strand 2
D
54 66anti-parallel
Strand 3
D
69 84anti-parallel
Strand 4
D
87 99anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il