Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MNI entry

There are 2 chains in PDB entry 5MNI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	HIS 9	GLU 430
G	MET 11	HIS 326

There are118 helices in PDB entry 5MNI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	10	19	Right-handed alpha
Helix 2	AA2	E	53	64	Right-handed alpha
Helix 3	AA3	E	77	88	Right-handed alpha
Helix 4	AA4	E	92	96	Right-handed 310
Helix 5	AA5	E	116	124	Right-handed alpha
Helix 6	AA6	E	124	132	Right-handed alpha
Helix 7	AA7	E	148	159	Right-handed alpha
Helix 8	AA8	E	173	177	Right-handed 310
Helix 9	AA9	E	220	233	Right-handed alpha
Helix 10	AB1	E	243	251	Right-handed alpha
Helix 11	AB2	E	260	262	Right-handed 310
Helix 12	AB3	E	279	290	Right-handed alpha
Helix 13	AB4	E	399	407	Right-handed alpha
Helix 14	AB5	E	418	425	Right-handed alpha
Helix 15	AB6	G	12	19	Right-handed alpha
Helix 16	AB7	G	41	44	Right-handed 310
Helix 17	AB8	G	53	65	Right-handed alpha
Helix 18	AB9	G	77	88	Right-handed alpha
Helix 19	AC1	G	92	96	Right-handed 310
Helix 20	AC2	G	117	124	Right-handed alpha
Helix 21	AC3	G	124	132	Right-handed alpha
Helix 22	AC4	G	148	159	Right-handed alpha
Helix 23	AC5	G	172	176	Right-handed alpha
Helix 24	AC6	G	220	233	Right-handed alpha
Helix 25	AC7	G	243	251	Right-handed alpha
Helix 26	AC8	G	260	262	Right-handed 310
Helix 27	AC9	G	279	290	Right-handed alpha
Helix 28	AD1	G	399	407	Right-handed alpha
Helix 29	AD2	G	418	425	Right-handed alpha
Helix 30	AD3	H	11	19	Right-handed alpha
Helix 31	AD4	H	53	65	Right-handed alpha
Helix 32	AD5	H	77	88	Right-handed alpha
Helix 33	AD6	H	92	96	Right-handed 310
Helix 34	AD7	H	117	124	Right-handed alpha
Helix 35	AD8	H	124	132	Right-handed alpha
Helix 36	AD9	H	148	160	Right-handed alpha
Helix 37	AE1	H	174	178	Right-handed 310
Helix 38	AE2	H	220	233	Right-handed alpha
Helix 39	AE3	H	243	251	Right-handed alpha
Helix 40	AE4	H	260	262	Right-handed 310
Helix 41	AE5	H	279	290	Right-handed alpha
Helix 42	AE6	H	399	407	Right-handed alpha
Helix 43	AE7	H	418	425	Right-handed alpha
Helix 44	AE8	F	14	19	Right-handed alpha
Helix 45	AE9	F	41	44	Right-handed 310
Helix 46	AF1	F	53	65	Right-handed alpha
Helix 47	AF2	F	77	88	Right-handed alpha
Helix 48	AF3	F	92	96	Right-handed 310
Helix 49	AF4	F	117	124	Right-handed alpha
Helix 50	AF5	F	124	132	Right-handed alpha
Helix 51	AF6	F	148	160	Right-handed alpha
Helix 52	AF7	F	173	177	Right-handed 310
Helix 53	AF8	F	220	233	Right-handed alpha
Helix 54	AF9	F	243	252	Right-handed alpha
Helix 55	AG1	F	260	262	Right-handed 310
Helix 56	AG2	F	279	290	Right-handed alpha
Helix 57	AG3	F	399	407	Right-handed alpha
Helix 58	AG4	F	418	425	Right-handed alpha
Helix 59	AG5	A	14	19	Right-handed alpha
Helix 60	AG6	A	41	44	Right-handed 310
Helix 61	AG7	A	53	65	Right-handed alpha
Helix 62	AG8	A	77	88	Right-handed alpha
Helix 63	AG9	A	92	96	Right-handed 310
Helix 64	AH1	A	117	124	Right-handed alpha
Helix 65	AH2	A	124	132	Right-handed alpha
Helix 66	AH3	A	148	160	Right-handed alpha
Helix 67	AH4	A	172	176	Right-handed alpha
Helix 68	AH5	A	220	233	Right-handed alpha
Helix 69	AH6	A	243	251	Right-handed alpha
Helix 70	AH7	A	260	262	Right-handed 310
Helix 71	AH8	A	279	290	Right-handed alpha
Helix 72	AH9	A	399	407	Right-handed alpha
Helix 73	AI1	A	418	425	Right-handed alpha
Helix 74	AI2	B	11	19	Right-handed alpha
Helix 75	AI3	B	41	44	Right-handed 310
Helix 76	AI4	B	53	65	Right-handed alpha
Helix 77	AI5	B	77	88	Right-handed alpha
Helix 78	AI6	B	92	96	Right-handed 310
Helix 79	AI7	B	116	124	Right-handed alpha
Helix 80	AI8	B	124	132	Right-handed alpha
Helix 81	AI9	B	148	160	Right-handed alpha
Helix 82	AJ1	B	172	176	Right-handed alpha
Helix 83	AJ2	B	220	233	Right-handed alpha
Helix 84	AJ3	B	243	251	Right-handed alpha
Helix 85	AJ4	B	260	262	Right-handed 310
Helix 86	AJ5	B	279	290	Right-handed alpha
Helix 87	AJ6	B	399	407	Right-handed alpha
Helix 88	AJ7	B	418	425	Right-handed alpha
Helix 89	AJ8	D	11	19	Right-handed alpha
Helix 90	AJ9	D	41	44	Right-handed 310
Helix 91	AK1	D	53	65	Right-handed alpha
Helix 92	AK2	D	77	88	Right-handed alpha
Helix 93	AK3	D	92	96	Right-handed 310
Helix 94	AK4	D	118	124	Right-handed alpha
Helix 95	AK5	D	124	132	Right-handed alpha
Helix 96	AK6	D	148	160	Right-handed alpha
Helix 97	AK7	D	173	177	Right-handed 310
Helix 98	AK8	D	220	233	Right-handed alpha
Helix 99	AK9	D	243	251	Right-handed alpha
Helix 100	AL1	D	260	262	Right-handed 310
Helix 101	AL2	D	279	290	Right-handed alpha
Helix 102	AL3	D	399	407	Right-handed alpha
Helix 103	AL4	D	418	425	Right-handed alpha
Helix 104	AL5	C	11	19	Right-handed alpha
Helix 105	AL6	C	41	44	Right-handed 310
Helix 106	AL7	C	53	65	Right-handed alpha
Helix 107	AL8	C	77	88	Right-handed alpha
Helix 108	AL9	C	92	96	Right-handed 310
Helix 109	AM1	C	117	124	Right-handed alpha
Helix 110	AM2	C	124	131	Right-handed alpha
Helix 111	AM3	C	148	160	Right-handed alpha
Helix 112	AM4	C	174	177	Right-handed 310
Helix 113	AM5	C	220	232	Right-handed alpha
Helix 114	AM6	C	243	251	Right-handed alpha
Helix 115	AM7	C	260	262	Right-handed 310
Helix 116	AM8	C	279	292	Right-handed alpha
Helix 117	AM9	C	399	407	Right-handed alpha
Helix 118	AN1	C	418	425	Right-handed alpha

There are 47 sheets in PDB entry 5MNI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	103	first strand
Strand 2	E	68	73	parallel
Strand 3	E	20	26	parallel
Strand 4	E	135	140	parallel
Strand 5	E	216	219	anti-parallel
Strand 6	E	163	167	anti-parallel
Strand 7	E	254	258	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	171	first strand
Strand 2	E	208	212	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	319	first strand
Strand 2	E	339	341	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	344	346	parallel
Strand 3	E	361	363	parallel
Strand 4	E	378	380	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	367	first strand
Strand 2	E	382	384	parallel
Strand 3	E	415	417	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	183	first strand
Strand 2	E	189	194	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	102	first strand
Strand 2	G	68	72	parallel
Strand 3	G	20	25	parallel
Strand 4	G	135	140	parallel
Strand 5	G	216	219	anti-parallel
Strand 6	G	163	167	anti-parallel
Strand 7	G	254	258	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	171	first strand
Strand 2	G	208	212	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	317	319	first strand
Strand 2	G	339	341	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	328	330	first strand
Strand 2	G	344	346	parallel
Strand 3	G	361	363	parallel
Strand 4	G	378	380	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	365	367	first strand
Strand 2	G	382	384	parallel
Strand 3	G	415	417	parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	103	first strand
Strand 2	H	68	73	parallel
Strand 3	H	20	25	parallel
Strand 4	H	135	140	parallel
Strand 5	H	216	219	anti-parallel
Strand 6	H	163	167	anti-parallel
Strand 7	H	254	258	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	210	212	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	317	319	first strand
Strand 2	H	339	341	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	328	330	first strand
Strand 2	H	344	346	parallel
Strand 3	H	361	363	parallel
Strand 4	H	378	380	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	365	367	first strand
Strand 2	H	382	384	parallel
Strand 3	H	415	417	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	183	first strand
Strand 2	H	189	193	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	68	73	parallel
Strand 3	F	20	25	parallel
Strand 4	F	135	140	parallel
Strand 5	F	216	219	anti-parallel
Strand 6	F	163	167	anti-parallel
Strand 7	F	254	258	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	171	first strand
Strand 2	F	208	212	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	319	first strand
Strand 2	F	339	341	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	330	first strand
Strand 2	F	344	346	parallel
Strand 3	F	361	363	parallel
Strand 4	F	378	380	parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	367	first strand
Strand 2	F	382	384	parallel
Strand 3	F	415	417	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	F	189	194	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	68	73	parallel
Strand 3	A	20	25	parallel
Strand 4	A	135	140	parallel
Strand 5	A	216	219	anti-parallel
Strand 6	A	163	167	anti-parallel
Strand 7	A	254	258	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	208	212	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	339	341	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	344	346	parallel
Strand 3	A	361	363	parallel
Strand 4	A	378	380	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	382	384	parallel
Strand 3	A	415	417	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	189	194	anti-parallel

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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	68	73	parallel
Strand 3	B	20	26	parallel
Strand 4	B	135	140	parallel
Strand 5	B	216	219	anti-parallel
Strand 6	B	163	167	anti-parallel
Strand 7	B	254	258	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	208	212	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	339	341	parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	344	346	parallel
Strand 3	B	361	363	parallel
Strand 4	B	378	380	parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	382	384	parallel
Strand 3	B	415	417	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	189	194	anti-parallel

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There are 7 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	68	73	parallel
Strand 3	D	20	25	parallel
Strand 4	D	135	140	parallel
Strand 5	D	216	219	anti-parallel
Strand 6	D	163	167	anti-parallel
Strand 7	D	254	258	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	208	212	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	339	341	parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	344	346	parallel
Strand 3	D	361	363	parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	367	first strand
Strand 2	D	382	384	parallel
Strand 3	D	415	417	parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	189	194	anti-parallel

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There are 7 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	68	73	parallel
Strand 3	C	20	26	parallel
Strand 4	C	135	140	parallel
Strand 5	C	216	219	anti-parallel
Strand 6	C	163	167	anti-parallel
Strand 7	C	254	258	parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	208	212	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	339	341	parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	344	346	parallel
Strand 3	C	361	363	parallel
Strand 4	C	378	380	parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	382	384	parallel
Strand 3	C	415	417	parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	189	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MNI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNI