Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MNJ entry

There are 8 chains in PDB entry 5MNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 147
B
 GLN 2GLY 76
C
 SER 429PRO 491
D
 GLU 428ALA 490
E
 ALA 2MET 147
F
 MET 1GLY 76
G
 SER 427PRO 491
H
 MET 427ALA 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5MNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
98 112Right-handed alpha
Helix 4
AA4
A
120 129Right-handed alpha
Helix 5
AA5
A
130 146Right-handed alpha
Helix 6
AA6
B
22 35Right-handed alpha
Helix 7
AA7
B
37 39Right-handed 310
Helix 8
AA8
C
430 436Right-handed alpha
Helix 9
AA9
C
461 471Right-handed alpha
Helix 10
AB1
D
428 435Right-handed 310
Helix 11
AB2
D
460 470Right-handed alpha
Helix 12
AB3
E
3 16Right-handed alpha
Helix 13
AB4
E
86 90Right-handed 310
Helix 14
AB5
E
98 111Right-handed alpha
Helix 15
AB6
E
120 130Right-handed alpha
Helix 16
AB7
E
130 146Right-handed alpha
Helix 17
AB8
F
22 35Right-handed alpha
Helix 18
AB9
F
37 39Right-handed 310
Helix 19
AC1
F
56 60Right-handed 310
Helix 20
AC2
G
428 436Right-handed alpha
Helix 21
AC3
G
461 471Right-handed alpha
Helix 22
AC4
H
427 435Right-handed 310
Helix 23
AC5
H
460 471Right-handed alpha
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There are 6 sheets in PDB entry 5MNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
66 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
448 452first strand
Strand 2
C
455 460anti-parallel
Strand 3
D
483 489parallel
Strand 4
D
447 451anti-parallel
Strand 5
D
454 459anti-parallel
Strand 6
C
484 489parallel
Strand 7
C
448 452anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 25first strand
Strand 2
E
32 38anti-parallel
Strand 3
E
49 55anti-parallel
Strand 4
E
66 69anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
448 452first strand
Strand 2
G
455 460anti-parallel
Strand 3
H
483 489parallel
Strand 4
H
447 451anti-parallel
Strand 5
H
454 459anti-parallel
Strand 6
G
484 489parallel
Strand 7
G
448 452anti-parallel
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