Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MNS entry

There are 6 chains in PDB entry 5MNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 13	TRP 407
B	ALA 13	TRP 407
C	ALA 13	TRP 407
D	ALA 13	TRP 407
E	ALA 13	TRP 407
F	ALA 13	TRP 407

There are118 helices in PDB entry 5MNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	57	67	Right-handed alpha
Helix 3	AA3	A	72	77	Right-handed 310
Helix 4	AA4	A	92	96	Right-handed 310
Helix 5	AA5	A	99	110	Right-handed alpha
Helix 6	AA6	A	113	120	Right-handed alpha
Helix 7	AA7	A	120	139	Right-handed alpha
Helix 8	AA8	A	144	148	Right-handed alpha
Helix 9	AA9	A	150	162	Right-handed alpha
Helix 10	AB1	A	164	166	Right-handed 310
Helix 11	AB2	A	167	179	Right-handed alpha
Helix 12	AB3	A	185	206	Right-handed alpha
Helix 13	AB4	A	214	226	Right-handed alpha
Helix 14	AB5	A	230	263	Right-handed alpha
Helix 15	AB6	A	263	273	Right-handed alpha
Helix 16	AB7	A	276	288	Right-handed alpha
Helix 17	AB8	A	320	325	Right-handed alpha
Helix 18	AB9	A	358	377	Right-handed alpha
Helix 19	AC1	A	385	389	Right-handed 310
Helix 20	AC2	B	29	38	Right-handed alpha
Helix 21	AC3	B	57	67	Right-handed alpha
Helix 22	AC4	B	72	77	Right-handed 310
Helix 23	AC5	B	99	110	Right-handed alpha
Helix 24	AC6	B	113	119	Right-handed alpha
Helix 25	AC7	B	120	139	Right-handed alpha
Helix 26	AC8	B	144	148	Right-handed alpha
Helix 27	AC9	B	150	162	Right-handed alpha
Helix 28	AD1	B	164	166	Right-handed 310
Helix 29	AD2	B	167	179	Right-handed alpha
Helix 30	AD3	B	185	206	Right-handed alpha
Helix 31	AD4	B	214	225	Right-handed alpha
Helix 32	AD5	B	230	263	Right-handed alpha
Helix 33	AD6	B	263	273	Right-handed alpha
Helix 34	AD7	B	276	288	Right-handed alpha
Helix 35	AD8	B	320	325	Right-handed alpha
Helix 36	AD9	B	351	355	Right-handed 310
Helix 37	AE1	B	358	377	Right-handed alpha
Helix 38	AE2	B	385	389	Right-handed 310
Helix 39	AE3	C	29	38	Right-handed alpha
Helix 40	AE4	C	57	67	Right-handed alpha
Helix 41	AE5	C	72	77	Right-handed 310
Helix 42	AE6	C	92	96	Right-handed 310
Helix 43	AE7	C	99	110	Right-handed alpha
Helix 44	AE8	C	113	119	Right-handed alpha
Helix 45	AE9	C	120	139	Right-handed alpha
Helix 46	AF1	C	144	148	Right-handed alpha
Helix 47	AF2	C	150	162	Right-handed alpha
Helix 48	AF3	C	164	166	Right-handed 310
Helix 49	AF4	C	167	179	Right-handed alpha
Helix 50	AF5	C	185	206	Right-handed alpha
Helix 51	AF6	C	214	225	Right-handed alpha
Helix 52	AF7	C	230	263	Right-handed alpha
Helix 53	AF8	C	264	273	Right-handed alpha
Helix 54	AF9	C	276	288	Right-handed alpha
Helix 55	AG1	C	320	325	Right-handed alpha
Helix 56	AG2	C	351	355	Right-handed 310
Helix 57	AG3	C	358	377	Right-handed alpha
Helix 58	AG4	C	385	389	Right-handed 310
Helix 59	AG5	D	29	38	Right-handed alpha
Helix 60	AG6	D	57	67	Right-handed alpha
Helix 61	AG7	D	72	77	Right-handed 310
Helix 62	AG8	D	92	96	Right-handed 310
Helix 63	AG9	D	99	106	Right-handed alpha
Helix 64	AH1	D	107	108	Right-handed 310
Helix 65	AH2	D	109	112	Right-handed 310
Helix 66	AH3	D	113	119	Right-handed alpha
Helix 67	AH4	D	120	139	Right-handed alpha
Helix 68	AH5	D	144	148	Right-handed alpha
Helix 69	AH6	D	150	162	Right-handed alpha
Helix 70	AH7	D	164	166	Right-handed 310
Helix 71	AH8	D	167	179	Right-handed alpha
Helix 72	AH9	D	185	210	Right-handed alpha
Helix 73	AI1	D	214	223	Right-handed alpha
Helix 74	AI2	D	230	262	Right-handed alpha
Helix 75	AI3	D	264	273	Right-handed alpha
Helix 76	AI4	D	276	288	Right-handed alpha
Helix 77	AI5	D	320	325	Right-handed alpha
Helix 78	AI6	D	351	355	Right-handed 310
Helix 79	AI7	D	358	377	Right-handed alpha
Helix 80	AI8	D	385	389	Right-handed 310
Helix 81	AI9	E	29	38	Right-handed alpha
Helix 82	AJ1	E	57	67	Right-handed alpha
Helix 83	AJ2	E	72	77	Right-handed 310
Helix 84	AJ3	E	92	96	Right-handed 310
Helix 85	AJ4	E	99	107	Right-handed alpha
Helix 86	AJ5	E	108	112	Right-handed 310
Helix 87	AJ6	E	113	139	Right-handed alpha
Helix 88	AJ7	E	144	148	Right-handed alpha
Helix 89	AJ8	E	150	162	Right-handed alpha
Helix 90	AJ9	E	164	166	Right-handed 310
Helix 91	AK1	E	167	179	Right-handed alpha
Helix 92	AK2	E	185	206	Right-handed alpha
Helix 93	AK3	E	214	223	Right-handed alpha
Helix 94	AK4	E	230	263	Right-handed alpha
Helix 95	AK5	E	263	273	Right-handed alpha
Helix 96	AK6	E	276	288	Right-handed alpha
Helix 97	AK7	E	320	325	Right-handed alpha
Helix 98	AK8	E	351	355	Right-handed 310
Helix 99	AK9	E	358	377	Right-handed alpha
Helix 100	AL1	F	29	38	Right-handed alpha
Helix 101	AL2	F	57	67	Right-handed alpha
Helix 102	AL3	F	92	96	Right-handed 310
Helix 103	AL4	F	99	109	Right-handed alpha
Helix 104	AL5	F	110	112	Right-handed 310
Helix 105	AL6	F	113	120	Right-handed alpha
Helix 106	AL7	F	120	139	Right-handed alpha
Helix 107	AL8	F	144	148	Right-handed alpha
Helix 108	AL9	F	150	162	Right-handed alpha
Helix 109	AM1	F	164	166	Right-handed 310
Helix 110	AM2	F	167	179	Right-handed alpha
Helix 111	AM3	F	185	206	Right-handed alpha
Helix 112	AM4	F	214	225	Right-handed alpha
Helix 113	AM5	F	230	263	Right-handed alpha
Helix 114	AM6	F	263	272	Right-handed alpha
Helix 115	AM7	F	276	288	Right-handed alpha
Helix 116	AM8	F	320	326	Right-handed alpha
Helix 117	AM9	F	351	355	Right-handed 310
Helix 118	AN1	F	358	376	Right-handed alpha

There are 19 sheets in PDB entry 5MNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	316	319	parallel
Strand 4	A	298	300	anti-parallel
Strand 5	A	70	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	404	406	anti-parallel
Strand 3	A	381	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	310	311	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	316	319	parallel
Strand 4	B	298	300	anti-parallel
Strand 5	B	70	71	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	404	406	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	310	311	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	52	55	anti-parallel
Strand 3	C	316	319	parallel
Strand 4	C	298	300	anti-parallel
Strand 5	C	70	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	404	406	anti-parallel
Strand 3	C	381	382	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	311	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	52	55	anti-parallel
Strand 3	D	316	319	parallel
Strand 4	D	298	300	anti-parallel
Strand 5	D	70	71	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	404	406	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	311	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	52	55	anti-parallel
Strand 3	E	316	319	parallel
Strand 4	E	298	300	anti-parallel
Strand 5	E	70	71	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	404	406	anti-parallel
Strand 3	E	381	382	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	310	311	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	52	55	anti-parallel
Strand 3	F	316	319	parallel
Strand 4	F	298	300	anti-parallel
Strand 5	F	70	71	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	404	406	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	310	311	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	390	391	first strand
Strand 2	F	400	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNS