Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MNT entry

There are 4 chains in PDB entry 5MNT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ARG 419
B	GLY -1	ARG 419
C	SER 0	ARG 419
D	PRO 1	ARG 419

There are 41 helices in PDB entry 5MNT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	24	Right-handed alpha
Helix 2	AA2	A	127	177	Right-handed alpha
Helix 3	AA3	A	178	188	Right-handed alpha
Helix 4	AA4	A	201	210	Right-handed alpha
Helix 5	AA5	A	210	234	Right-handed alpha
Helix 6	AA6	A	293	303	Right-handed alpha
Helix 7	AA7	A	310	315	Right-handed alpha
Helix 8	AA8	A	315	336	Right-handed alpha
Helix 9	AA9	A	337	339	Right-handed 310
Helix 10	AB1	A	395	400	Right-handed alpha
Helix 11	AB2	A	400	416	Right-handed alpha
Helix 12	AB3	B	18	24	Right-handed alpha
Helix 13	AB4	B	127	177	Right-handed alpha
Helix 14	AB5	B	178	188	Right-handed alpha
Helix 15	AB6	B	201	210	Right-handed alpha
Helix 16	AB7	B	210	233	Right-handed alpha
Helix 17	AB8	B	293	302	Right-handed alpha
Helix 18	AB9	B	310	315	Right-handed alpha
Helix 19	AC1	B	315	336	Right-handed alpha
Helix 20	AC2	B	396	416	Right-handed alpha
Helix 21	AC3	C	18	24	Right-handed alpha
Helix 22	AC4	C	127	141	Right-handed alpha
Helix 23	AC5	C	141	177	Right-handed alpha
Helix 24	AC6	C	178	191	Right-handed alpha
Helix 25	AC7	C	201	210	Right-handed alpha
Helix 26	AC8	C	210	233	Right-handed alpha
Helix 27	AC9	C	282	286	Right-handed 310
Helix 28	AD1	C	293	302	Right-handed alpha
Helix 29	AD2	C	315	337	Right-handed alpha
Helix 30	AD3	C	395	416	Right-handed alpha
Helix 31	AD4	D	18	24	Right-handed alpha
Helix 32	AD5	D	127	141	Right-handed alpha
Helix 33	AD6	D	141	177	Right-handed alpha
Helix 34	AD7	D	178	188	Right-handed alpha
Helix 35	AD8	D	201	210	Right-handed alpha
Helix 36	AD9	D	210	233	Right-handed alpha
Helix 37	AE1	D	282	286	Right-handed 310
Helix 38	AE2	D	293	302	Right-handed alpha
Helix 39	AE3	D	310	315	Right-handed alpha
Helix 40	AE4	D	315	337	Right-handed alpha
Helix 41	AE5	D	396	416	Right-handed alpha

There are 13 sheets in PDB entry 5MNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	15	17	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	63	anti-parallel
Strand 3	A	83	87	anti-parallel
Strand 4	A	381	385	anti-parallel
Strand 5	A	341	363	anti-parallel
Strand 6	A	366	378	anti-parallel
Strand 7	A	90	102	anti-parallel
Strand 8	A	115	119	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	54	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	90	102	anti-parallel
Strand 5	A	366	378	anti-parallel
Strand 6	A	341	363	anti-parallel
Strand 7	A	260	279	anti-parallel
Strand 8	A	236	252	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	15	17	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	63	anti-parallel
Strand 3	B	83	87	anti-parallel
Strand 4	B	381	385	anti-parallel
Strand 5	B	341	360	anti-parallel
Strand 6	B	261	279	anti-parallel
Strand 7	B	236	241	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	63	anti-parallel
Strand 3	B	83	87	anti-parallel
Strand 4	B	381	385	anti-parallel
Strand 5	B	341	360	anti-parallel
Strand 6	B	261	279	anti-parallel
Strand 7	B	245	252	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	107	119	anti-parallel
Strand 4	B	90	101	anti-parallel
Strand 5	B	369	378	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	15	17	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	63	anti-parallel
Strand 3	C	83	87	anti-parallel
Strand 4	C	381	385	anti-parallel
Strand 5	C	341	350	anti-parallel
Strand 6	C	260	279	anti-parallel
Strand 7	C	353	363	anti-parallel
Strand 8	C	366	378	anti-parallel
Strand 9	C	89	101	anti-parallel
Strand 10	C	107	120	anti-parallel
Strand 11	C	37	44	anti-parallel
Strand 12	C	48	54	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	63	anti-parallel
Strand 3	C	83	87	anti-parallel
Strand 4	C	381	385	anti-parallel
Strand 5	C	341	350	anti-parallel
Strand 6	C	260	279	anti-parallel
Strand 7	C	236	252	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	15	17	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	61	63	anti-parallel
Strand 3	D	83	87	anti-parallel
Strand 4	D	381	385	anti-parallel
Strand 5	D	341	363	anti-parallel
Strand 6	D	366	378	anti-parallel
Strand 7	D	90	100	anti-parallel
Strand 8	D	108	119	anti-parallel
Strand 9	D	37	44	anti-parallel
Strand 10	D	48	54	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	61	63	anti-parallel
Strand 3	D	83	87	anti-parallel
Strand 4	D	381	385	anti-parallel
Strand 5	D	341	363	anti-parallel
Strand 6	D	260	279	anti-parallel
Strand 7	D	236	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MNT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNT