Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MNV entry

There are 9 chains in PDB entry 5MNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	TRP 407
B	VAL 14	TRP 407
C	ASP 12	TRP 407
D	VAL 14	TRP 407
E	ALA 13	TRP 407
F	ALA 13	TRP 407
G	ALA 13	TRP 407
H	ALA 13	TRP 407
I	HIS 30	TRP 407

There are166 helices in PDB entry 5MNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	57	67	Right-handed alpha
Helix 3	AA3	A	72	77	Right-handed 310
Helix 4	AA4	A	92	96	Right-handed 310
Helix 5	AA5	A	99	110	Right-handed alpha
Helix 6	AA6	A	113	139	Right-handed alpha
Helix 7	AA7	A	144	148	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	167	177	Right-handed alpha
Helix 10	AB1	A	185	210	Right-handed alpha
Helix 11	AB2	A	214	221	Right-handed alpha
Helix 12	AB3	A	230	245	Right-handed alpha
Helix 13	AB4	A	246	263	Right-handed alpha
Helix 14	AB5	A	263	273	Right-handed alpha
Helix 15	AB6	A	275	288	Right-handed alpha
Helix 16	AB7	A	320	325	Right-handed alpha
Helix 17	AB8	A	351	355	Right-handed 310
Helix 18	AB9	A	356	357	Right-handed 310
Helix 19	AC1	A	358	377	Right-handed alpha
Helix 20	AC2	A	385	389	Right-handed 310
Helix 21	AC3	B	29	38	Right-handed alpha
Helix 22	AC4	B	57	67	Right-handed alpha
Helix 23	AC5	B	72	77	Right-handed 310
Helix 24	AC6	B	92	96	Right-handed 310
Helix 25	AC7	B	99	109	Right-handed alpha
Helix 26	AC8	B	110	112	Right-handed 310
Helix 27	AC9	B	113	119	Right-handed alpha
Helix 28	AD1	B	120	137	Right-handed alpha
Helix 29	AD2	B	144	148	Right-handed alpha
Helix 30	AD3	B	150	162	Right-handed alpha
Helix 31	AD4	B	167	179	Right-handed alpha
Helix 32	AD5	B	185	210	Right-handed alpha
Helix 33	AD6	B	214	224	Right-handed alpha
Helix 34	AD7	B	230	248	Right-handed alpha
Helix 35	AD8	B	248	263	Right-handed alpha
Helix 36	AD9	B	264	273	Right-handed alpha
Helix 37	AE1	B	276	288	Right-handed alpha
Helix 38	AE2	B	320	325	Right-handed alpha
Helix 39	AE3	B	351	355	Right-handed 310
Helix 40	AE4	B	356	357	Right-handed 310
Helix 41	AE5	B	358	377	Right-handed alpha
Helix 42	AE6	C	28	37	Right-handed alpha
Helix 43	AE7	C	57	67	Right-handed alpha
Helix 44	AE8	C	72	76	Right-handed 310
Helix 45	AE9	C	92	96	Right-handed 310
Helix 46	AF1	C	99	109	Right-handed alpha
Helix 47	AF2	C	113	119	Right-handed alpha
Helix 48	AF3	C	120	139	Right-handed alpha
Helix 49	AF4	C	144	148	Right-handed alpha
Helix 50	AF5	C	150	161	Right-handed alpha
Helix 51	AF6	C	164	166	Right-handed 310
Helix 52	AF7	C	167	179	Right-handed alpha
Helix 53	AF8	C	185	210	Right-handed alpha
Helix 54	AF9	C	214	226	Right-handed alpha
Helix 55	AG1	C	230	262	Right-handed alpha
Helix 56	AG2	C	264	273	Right-handed alpha
Helix 57	AG3	C	276	288	Right-handed alpha
Helix 58	AG4	C	320	325	Right-handed alpha
Helix 59	AG5	C	351	355	Right-handed 310
Helix 60	AG6	C	358	377	Right-handed alpha
Helix 61	AG7	D	29	38	Right-handed alpha
Helix 62	AG8	D	57	67	Right-handed alpha
Helix 63	AG9	D	72	77	Right-handed 310
Helix 64	AH1	D	99	112	Right-handed alpha
Helix 65	AH2	D	113	119	Right-handed alpha
Helix 66	AH3	D	120	139	Right-handed alpha
Helix 67	AH4	D	144	148	Right-handed alpha
Helix 68	AH5	D	150	162	Right-handed alpha
Helix 69	AH6	D	164	166	Right-handed 310
Helix 70	AH7	D	167	178	Right-handed alpha
Helix 71	AH8	D	187	210	Right-handed alpha
Helix 72	AH9	D	214	221	Right-handed alpha
Helix 73	AI1	D	230	245	Right-handed alpha
Helix 74	AI2	D	246	263	Right-handed alpha
Helix 75	AI3	D	264	273	Right-handed alpha
Helix 76	AI4	D	276	288	Right-handed alpha
Helix 77	AI5	D	320	325	Right-handed alpha
Helix 78	AI6	D	351	355	Right-handed 310
Helix 79	AI7	D	358	377	Right-handed alpha
Helix 80	AI8	D	385	389	Right-handed 310
Helix 81	AI9	E	29	38	Right-handed alpha
Helix 82	AJ1	E	57	67	Right-handed alpha
Helix 83	AJ2	E	72	77	Right-handed 310
Helix 84	AJ3	E	99	112	Right-handed alpha
Helix 85	AJ4	E	113	119	Right-handed alpha
Helix 86	AJ5	E	120	139	Right-handed alpha
Helix 87	AJ6	E	150	162	Right-handed alpha
Helix 88	AJ7	E	164	167	Right-handed 310
Helix 89	AJ8	E	168	178	Right-handed alpha
Helix 90	AJ9	E	187	210	Right-handed alpha
Helix 91	AK1	E	214	220	Right-handed alpha
Helix 92	AK2	E	230	263	Right-handed alpha
Helix 93	AK3	E	264	273	Right-handed alpha
Helix 94	AK4	E	276	288	Right-handed alpha
Helix 95	AK5	E	320	325	Right-handed alpha
Helix 96	AK6	E	358	377	Right-handed alpha
Helix 97	AK7	F	29	37	Right-handed alpha
Helix 98	AK8	F	57	67	Right-handed alpha
Helix 99	AK9	F	72	77	Right-handed 310
Helix 100	AL1	F	99	112	Right-handed alpha
Helix 101	AL2	F	113	120	Right-handed alpha
Helix 102	AL3	F	120	139	Right-handed alpha
Helix 103	AL4	F	144	148	Right-handed alpha
Helix 104	AL5	F	150	161	Right-handed alpha
Helix 105	AL6	F	164	166	Right-handed 310
Helix 106	AL7	F	167	179	Right-handed alpha
Helix 107	AL8	F	187	210	Right-handed alpha
Helix 108	AL9	F	214	220	Right-handed alpha
Helix 109	AM1	F	230	245	Right-handed alpha
Helix 110	AM2	F	246	263	Right-handed alpha
Helix 111	AM3	F	264	273	Right-handed alpha
Helix 112	AM4	F	276	288	Right-handed alpha
Helix 113	AM5	F	320	326	Right-handed alpha
Helix 114	AM6	F	358	377	Right-handed alpha
Helix 115	AM7	G	28	38	Right-handed alpha
Helix 116	AM8	G	57	66	Right-handed alpha
Helix 117	AM9	G	72	77	Right-handed 310
Helix 118	AN1	G	99	112	Right-handed alpha
Helix 119	AN2	G	113	139	Right-handed alpha
Helix 120	AN3	G	144	148	Right-handed alpha
Helix 121	AN4	G	150	161	Right-handed alpha
Helix 122	AN5	G	168	176	Right-handed alpha
Helix 123	AN6	G	192	210	Right-handed alpha
Helix 124	AN7	G	214	219	Right-handed alpha
Helix 125	AN8	G	231	245	Right-handed alpha
Helix 126	AN9	G	246	263	Right-handed alpha
Helix 127	AO1	G	264	273	Right-handed alpha
Helix 128	AO2	G	276	288	Right-handed alpha
Helix 129	AO3	G	320	325	Right-handed alpha
Helix 130	AO4	G	358	377	Right-handed alpha
Helix 131	AO5	H	28	38	Right-handed alpha
Helix 132	AO6	H	58	67	Right-handed alpha
Helix 133	AO7	H	72	77	Right-handed 310
Helix 134	AO8	H	99	112	Right-handed alpha
Helix 135	AO9	H	113	120	Right-handed alpha
Helix 136	AP1	H	120	139	Right-handed alpha
Helix 137	AP2	H	144	148	Right-handed alpha
Helix 138	AP3	H	150	161	Right-handed alpha
Helix 139	AP4	H	164	166	Right-handed 310
Helix 140	AP5	H	167	178	Right-handed alpha
Helix 141	AP6	H	186	210	Right-handed alpha
Helix 142	AP7	H	214	221	Right-handed alpha
Helix 143	AP8	H	230	245	Right-handed alpha
Helix 144	AP9	H	246	264	Right-handed alpha
Helix 145	AQ1	H	264	273	Right-handed alpha
Helix 146	AQ2	H	276	288	Right-handed alpha
Helix 147	AQ3	H	320	326	Right-handed alpha
Helix 148	AQ4	H	351	355	Right-handed 310
Helix 149	AQ5	H	358	377	Right-handed alpha
Helix 150	AQ6	I	31	37	Right-handed alpha
Helix 151	AQ7	I	57	66	Right-handed alpha
Helix 152	AQ8	I	99	110	Right-handed alpha
Helix 153	AQ9	I	113	119	Right-handed alpha
Helix 154	AR1	I	120	139	Right-handed alpha
Helix 155	AR2	I	144	148	Right-handed alpha
Helix 156	AR3	I	150	162	Right-handed alpha
Helix 157	AR4	I	164	166	Right-handed 310
Helix 158	AR5	I	167	179	Right-handed alpha
Helix 159	AR6	I	188	206	Right-handed alpha
Helix 160	AR7	I	207	210	Right-handed 310
Helix 161	AR8	I	221	226	Right-handed alpha
Helix 162	AR9	I	231	248	Right-handed alpha
Helix 163	AS1	I	248	263	Right-handed alpha
Helix 164	AS2	I	263	271	Right-handed alpha
Helix 165	AS3	I	281	288	Right-handed alpha
Helix 166	AS4	I	359	377	Right-handed alpha

There are 29 sheets in PDB entry 5MNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	316	319	parallel
Strand 4	A	298	300	anti-parallel
Strand 5	A	70	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	404	406	anti-parallel
Strand 3	A	381	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	309	311	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	315	319	parallel
Strand 4	B	298	300	anti-parallel
Strand 5	B	70	71	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	404	406	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	310	311	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	52	55	anti-parallel
Strand 3	C	315	319	parallel
Strand 4	C	298	300	anti-parallel
Strand 5	C	70	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	404	406	anti-parallel
Strand 3	C	381	382	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	311	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	391	first strand
Strand 2	C	400	402	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	52	55	anti-parallel
Strand 3	D	316	319	parallel
Strand 4	D	298	300	anti-parallel
Strand 5	D	70	71	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	404	406	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	311	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	44	first strand
Strand 2	E	51	55	anti-parallel
Strand 3	E	316	319	parallel
Strand 4	E	298	300	anti-parallel
Strand 5	E	70	71	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	404	406	anti-parallel
Strand 3	E	381	382	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	310	311	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	F	53	54	anti-parallel
Strand 3	F	316	318	parallel
Strand 4	F	298	300	anti-parallel
Strand 5	F	70	71	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	404	406	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	310	311	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	53	55	anti-parallel
Strand 3	G	317	319	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	71	first strand
Strand 2	G	299	300	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	143	first strand
Strand 2	G	404	406	anti-parallel
Strand 3	G	381	382	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	305	first strand
Strand 2	G	310	311	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	351	first strand
Strand 2	G	354	355	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	52	55	anti-parallel
Strand 3	H	317	319	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	71	first strand
Strand 2	H	299	300	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	143	first strand
Strand 2	H	404	405	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	305	first strand
Strand 2	H	310	311	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	142	143	first strand
Strand 2	I	404	406	anti-parallel
Strand 3	I	381	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MNV