Analysis of interatomic Contacts of Structural Units in PDB entry:
5MO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MO4 entry

There is 1 chain in PDB entry 5MO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 83LYS 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5MO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 144Right-handed 310
Helix 2
AA2
A
152 161Right-handed alpha
Helix 3
AA3
A
213 222Right-handed alpha
Helix 4
AA4
A
257 259Right-handed 310
Helix 5
AA5
A
268 271Right-handed 310
Helix 6
AA6
A
282 284Right-handed 310
Helix 7
AA7
A
299 311Right-handed alpha
Helix 8
AA8
A
341 349Right-handed alpha
Helix 9
AA9
A
355 376Right-handed alpha
Helix 10
AB1
A
384 386Right-handed 310
Helix 11
AB2
A
392 394Right-handed 310
Helix 12
AB3
A
420 425Right-handed 310
Helix 13
AB4
A
426 433Right-handed alpha
Helix 14
AB5
A
436 453Right-handed alpha
Helix 15
AB6
A
466 473Right-handed alpha
Helix 16
AB7
A
484 495Right-handed alpha
Helix 17
AB8
A
498 502Right-handed 310
Helix 18
AB9
A
504 514Right-handed alpha
Helix 19
AC1
A
520 531Right-handed alpha
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There are 6 sheets in PDB entry 5MO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
118 122anti-parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
84 87anti-parallel
Strand 5
A
135 137anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
167 172parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
189 194anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
167 172parallel
Strand 3
A
234 235parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
203 204anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
285 291anti-parallel
Strand 4
A
331 335anti-parallel
Strand 5
A
320 324anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
396 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il