Analysis of interatomic Contacts of Structural Units in PDB entry:
5MOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MOY entry

There are 2 chains in PDB entry 5MOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 873SER 1295
B
 ASP 464LYS 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5MOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
929 933Right-handed 310
Helix 2
AA2
A
954 958Right-handed 310
Helix 3
AA3
A
1080 1091Right-handed alpha
Helix 4
AA4
A
1211 1215Right-handed 310
Helix 5
AA5
A
1265 1273Right-handed alpha
Helix 6
AA6
B
548 550Right-handed 310
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There are 14 sheets in PDB entry 5MOY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
881 883first strand
Strand 2
A
888 890anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 900first strand
Strand 2
A
924 927anti-parallel
Strand 3
A
1052 1055anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
914 917first strand
Strand 2
A
1066 1070anti-parallel
Strand 3
A
941 949anti-parallel
Strand 4
A
1015 1021anti-parallel
Strand 5
A
1026 1031anti-parallel
Strand 6
A
1034 1040anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
942 944first strand
Strand 2
A
1073 1075anti-parallel
Strand 3
A
877 880anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 1000first strand
Strand 2
A
982 988anti-parallel
Strand 3
A
972 979anti-parallel
Strand 4
A
962 969anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1115first strand
Strand 2
A
1282 1285anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1122 1125first strand
Strand 2
A
1134 1137anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1145first strand
Strand 2
A
1149 1152anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1164first strand
Strand 2
A
1180 1186anti-parallel
Strand 3
A
1189 1194anti-parallel
Strand 4
A
1207 1209anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1220 1223first strand
Strand 2
A
1237 1240anti-parallel
Strand 3
A
1246 1255anti-parallel
Strand 4
A
1258 1264anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 479first strand
Strand 2
B
495 498parallel
Strand 3
B
516 518parallel
Strand 4
B
536 538parallel
Strand 5
B
556 558parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 483first strand
Strand 2
B
500 503parallel
Strand 3
B
521 523parallel
Strand 4
B
541 543parallel
Strand 5
B
561 563parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 493first strand
Strand 2
B
510 513parallel
Strand 3
B
531 533parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 508first strand
Strand 2
B
526 528parallel
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