Analysis of interatomic Contacts of Structural Units in PDB entry:
5MP2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MP2 entry

There are 4 chains in PDB entry 5MP2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 49	THR 273
B	GLU 50	THR 273
C	VAL 2	SER 124
D	GLN 1	SER 125

There are 20 helices in PDB entry 5MP2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	74	Right-handed alpha
Helix 2	AA2	A	96	112	Right-handed alpha
Helix 3	AA3	A	155	164	Right-handed alpha
Helix 4	AA4	A	165	167	Right-handed 310
Helix 5	AA5	A	187	203	Right-handed alpha
Helix 6	AA6	A	218	233	Right-handed alpha
Helix 7	AA7	A	257	272	Right-handed alpha
Helix 8	AA8	B	62	74	Right-handed alpha
Helix 9	AA9	B	96	112	Right-handed alpha
Helix 10	AB1	B	155	164	Right-handed alpha
Helix 11	AB2	B	165	167	Right-handed 310
Helix 12	AB3	B	187	204	Right-handed alpha
Helix 13	AB4	B	218	229	Right-handed alpha
Helix 14	AB5	B	257	271	Right-handed alpha
Helix 15	AB6	C	87	91	Right-handed 310
Helix 16	AB7	C	108	112	Right-handed 310
Helix 17	AB8	D	27	31	Right-handed 310
Helix 18	AB9	D	62	65	Right-handed 310
Helix 19	AC1	D	87	91	Right-handed 310
Helix 20	AC2	D	108	112	Right-handed 310

There are 13 sheets in PDB entry 5MP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	C	103	104	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	145	150	parallel
Strand 4	A	181	186	anti-parallel
Strand 5	A	172	176	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	122	126	parallel
Strand 3	A	113	117	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	251	255	anti-parallel
Strand 3	A	209	213	anti-parallel
Strand 4	B	209	213	anti-parallel
Strand 5	B	251	255	anti-parallel
Strand 6	B	242	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	D	103	104	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	145	150	parallel
Strand 4	B	181	186	anti-parallel
Strand 5	B	172	176	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	122	126	parallel
Strand 3	B	113	117	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	69	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	119	124	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	119	124	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MP2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MP2