Analysis of interatomic Contacts of Structural Units in PDB entry:
5MP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MP7 entry

There are 3 chains in PDB entry 5MP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLY 316
C
 LYS 10GLY 316
B
 LYS 10GLY 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5MP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
70 88Right-handed alpha
Helix 3
AA3
A
115 128Right-handed alpha
Helix 4
AA4
A
139 146Right-handed 310
Helix 5
AA5
A
155 168Right-handed alpha
Helix 6
AA6
A
178 180Right-handed 310
Helix 7
AA7
A
181 192Right-handed alpha
Helix 8
AA8
A
236 249Right-handed alpha
Helix 9
AA9
A
266 274Right-handed alpha
Helix 10
AB1
A
288 292Right-handed 310
Helix 11
AB2
A
301 315Right-handed alpha
Helix 12
AB3
C
20 32Right-handed alpha
Helix 13
AB4
C
70 88Right-handed alpha
Helix 14
AB5
C
115 128Right-handed alpha
Helix 15
AB6
C
139 146Right-handed 310
Helix 16
AB7
C
155 168Right-handed alpha
Helix 17
AB8
C
178 180Right-handed 310
Helix 18
AB9
C
181 192Right-handed alpha
Helix 19
AC1
C
236 249Right-handed alpha
Helix 20
AC2
C
266 274Right-handed alpha
Helix 21
AC3
C
288 292Right-handed 310
Helix 22
AC4
C
301 315Right-handed alpha
Helix 23
AC5
B
20 32Right-handed alpha
Helix 24
AC6
B
70 88Right-handed alpha
Helix 25
AC7
B
115 128Right-handed alpha
Helix 26
AC8
B
139 146Right-handed 310
Helix 27
AC9
B
155 168Right-handed alpha
Helix 28
AD1
B
178 180Right-handed 310
Helix 29
AD2
B
181 192Right-handed alpha
Helix 30
AD3
B
236 249Right-handed alpha
Helix 31
AD4
B
266 274Right-handed alpha
Helix 32
AD5
B
288 292Right-handed 310
Helix 33
AD6
B
301 314Right-handed alpha
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There are 9 sheets in PDB entry 5MP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
60 64parallel
Strand 3
A
92 97parallel
Strand 4
A
131 135parallel
Strand 5
A
150 153parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
48 52anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
172 176parallel
Strand 4
A
225 233parallel
Strand 5
A
253 261parallel
Strand 6
A
278 282parallel
Strand 7
A
296 299parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
60 64parallel
Strand 3
C
92 97parallel
Strand 4
C
131 135parallel
Strand 5
C
150 153parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
48 52anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 218first strand
Strand 2
C
197 202anti-parallel
Strand 3
C
172 176parallel
Strand 4
C
225 233parallel
Strand 5
C
253 261parallel
Strand 6
C
278 282parallel
Strand 7
C
296 299parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
60 64parallel
Strand 3
B
92 97parallel
Strand 4
B
131 135parallel
Strand 5
B
150 153parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
48 52anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
197 202anti-parallel
Strand 3
B
172 176parallel
Strand 4
B
225 233parallel
Strand 5
B
253 261parallel
Strand 6
B
278 282parallel
Strand 7
B
296 299parallel
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