Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MPD entry

There are 13 chains in PDB entry 5MPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
W	MET 1	SER 197
V	THR 18	LYS 306
T	LEU 7	ASN 272
X	VAL 7	SER 133
Y	THR 17	GLN 89
Z	MET 1	TYR 970
N	THR 4	ASP 925
S	LEU 18	LYS 492
P	MET 1	HIS 440
Q	MET 1	TYR 434
R	ARG 20	THR 424
U	MET 1	ASN 298
O	GLU 6	VAL 393

There are256 helices in PDB entry 5MPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	W	24	44	Right-handed alpha
Helix 2	AA2	W	68	78	Right-handed alpha
Helix 3	AA3	W	86	99	Right-handed alpha
Helix 4	AA4	W	121	132	Right-handed alpha
Helix 5	AA5	W	154	162	Right-handed alpha
Helix 6	AA6	W	180	188	Right-handed alpha
Helix 7	AA7	V	31	44	Right-handed alpha
Helix 8	AA8	V	84	98	Right-handed alpha
Helix 9	AA9	V	119	133	Right-handed alpha
Helix 10	AB1	V	160	166	Right-handed alpha
Helix 11	AB2	V	168	173	Right-handed alpha
Helix 12	AB3	V	184	196	Right-handed alpha
Helix 13	AB4	V	206	215	Right-handed alpha
Helix 14	AB5	V	219	224	Right-handed alpha
Helix 15	AB6	V	230	255	Right-handed alpha
Helix 16	AB7	V	262	270	Right-handed alpha
Helix 17	AB8	V	275	306	Right-handed alpha
Helix 18	AB9	T	8	18	Right-handed alpha
Helix 19	AC1	T	19	41	Right-handed alpha
Helix 20	AC2	T	49	72	Right-handed alpha
Helix 21	AC3	T	74	91	Right-handed alpha
Helix 22	AC4	T	99	116	Right-handed alpha
Helix 23	AC5	T	118	130	Right-handed alpha
Helix 24	AC6	T	131	138	Right-handed alpha
Helix 25	AC7	T	142	155	Right-handed alpha
Helix 26	AC8	T	156	167	Right-handed alpha
Helix 27	AC9	T	168	171	Right-handed 310
Helix 28	AD1	T	174	197	Right-handed alpha
Helix 29	AD2	T	201	209	Right-handed alpha
Helix 30	AD3	T	213	224	Right-handed alpha
Helix 31	AD4	T	236	247	Right-handed alpha
Helix 32	AD5	T	258	271	Right-handed alpha
Helix 33	AD6	X	118	131	Right-handed alpha
Helix 34	AD7	Y	18	31	Right-handed alpha
Helix 35	AD8	Y	36	42	Right-handed alpha
Helix 36	AD9	Y	71	88	Right-handed alpha
Helix 37	AE1	Z	8	19	Right-handed alpha
Helix 38	AE2	Z	24	33	Right-handed alpha
Helix 39	AE3	Z	37	55	Right-handed alpha
Helix 40	AE4	Z	61	66	Right-handed alpha
Helix 41	AE5	Z	68	78	Right-handed alpha
Helix 42	AE6	Z	85	91	Right-handed alpha
Helix 43	AE7	Z	91	104	Right-handed alpha
Helix 44	AE8	Z	108	126	Right-handed alpha
Helix 45	AE9	Z	131	141	Right-handed alpha
Helix 46	AF1	Z	148	170	Right-handed alpha
Helix 47	AF2	Z	189	204	Right-handed alpha
Helix 48	AF3	Z	207	216	Right-handed alpha
Helix 49	AF4	Z	217	232	Right-handed alpha
Helix 50	AF5	Z	237	252	Right-handed alpha
Helix 51	AF6	Z	253	256	Right-handed 310
Helix 52	AF7	Z	257	275	Right-handed alpha
Helix 53	AF8	Z	278	289	Right-handed alpha
Helix 54	AF9	Z	290	303	Right-handed alpha
Helix 55	AG1	Z	310	321	Right-handed alpha
Helix 56	AG2	Z	325	332	Right-handed alpha
Helix 57	AG3	Z	333	339	Right-handed alpha
Helix 58	AG4	Z	342	350	Right-handed alpha
Helix 59	AG5	Z	351	366	Right-handed alpha
Helix 60	AG6	Z	376	391	Right-handed alpha
Helix 61	AG7	Z	397	403	Right-handed alpha
Helix 62	AG8	Z	403	409	Right-handed alpha
Helix 63	AG9	Z	412	424	Right-handed alpha
Helix 64	AH1	Z	432	441	Right-handed alpha
Helix 65	AH2	Z	444	459	Right-handed alpha
Helix 66	AH3	Z	460	462	Right-handed 310
Helix 67	AH4	Z	469	480	Right-handed alpha
Helix 68	AH5	Z	482	498	Right-handed alpha
Helix 69	AH6	Z	502	509	Right-handed alpha
Helix 70	AH7	Z	520	522	Right-handed 310
Helix 71	AH8	Z	523	535	Right-handed alpha
Helix 72	AH9	Z	542	556	Right-handed alpha
Helix 73	AI1	Z	559	574	Right-handed alpha
Helix 74	AI2	Z	580	591	Right-handed alpha
Helix 75	AI3	Z	593	609	Right-handed alpha
Helix 76	AI4	Z	613	635	Right-handed alpha
Helix 77	AI5	Z	701	727	Right-handed alpha
Helix 78	AI6	Z	730	750	Right-handed alpha
Helix 79	AI7	Z	750	769	Right-handed alpha
Helix 80	AI8	Z	774	787	Right-handed alpha
Helix 81	AI9	Z	790	801	Right-handed alpha
Helix 82	AJ1	Z	807	822	Right-handed alpha
Helix 83	AJ2	Z	825	839	Right-handed alpha
Helix 84	AJ3	Z	863	869	Right-handed alpha
Helix 85	AJ4	Z	875	882	Right-handed alpha
Helix 86	AJ5	Z	947	950	Right-handed 310
Helix 87	AJ6	N	6	13	Right-handed alpha
Helix 88	AJ7	N	17	29	Right-handed alpha
Helix 89	AJ8	N	31	36	Right-handed alpha
Helix 90	AJ9	N	37	52	Right-handed alpha
Helix 91	AK1	N	57	73	Right-handed alpha
Helix 92	AK2	N	74	86	Right-handed alpha
Helix 93	AK3	N	88	94	Right-handed alpha
Helix 94	AK4	N	99	118	Right-handed alpha
Helix 95	AK5	N	130	147	Right-handed alpha
Helix 96	AK6	N	149	160	Right-handed alpha
Helix 97	AK7	N	162	173	Right-handed alpha
Helix 98	AK8	N	178	196	Right-handed alpha
Helix 99	AK9	N	199	216	Right-handed alpha
Helix 100	AL1	N	222	233	Right-handed alpha
Helix 101	AL2	N	234	245	Right-handed alpha
Helix 102	AL3	N	250	265	Right-handed alpha
Helix 103	AL4	N	266	281	Right-handed alpha
Helix 104	AL5	N	283	291	Right-handed alpha
Helix 105	AL6	N	292	306	Right-handed alpha
Helix 106	AL7	N	311	321	Right-handed alpha
Helix 107	AL8	N	325	340	Right-handed alpha
Helix 108	AL9	N	346	352	Right-handed alpha
Helix 109	AM1	N	352	358	Right-handed alpha
Helix 110	AM2	N	360	370	Right-handed alpha
Helix 111	AM3	N	370	375	Right-handed alpha
Helix 112	AM4	N	381	387	Right-handed alpha
Helix 113	AM5	N	388	390	Right-handed 310
Helix 114	AM6	N	397	412	Right-handed alpha
Helix 115	AM7	N	416	431	Right-handed alpha
Helix 116	AM8	N	436	454	Right-handed alpha
Helix 117	AM9	N	459	473	Right-handed alpha
Helix 118	AN1	N	474	490	Right-handed alpha
Helix 119	AN2	N	494	508	Right-handed alpha
Helix 120	AN3	N	510	525	Right-handed alpha
Helix 121	AN4	N	528	531	Right-handed 310
Helix 122	AN5	N	532	542	Right-handed alpha
Helix 123	AN6	N	544	559	Right-handed alpha
Helix 124	AN7	N	564	578	Right-handed alpha
Helix 125	AN8	N	580	595	Right-handed alpha
Helix 126	AN9	N	601	610	Right-handed alpha
Helix 127	AO1	N	614	629	Right-handed alpha
Helix 128	AO2	N	634	646	Right-handed alpha
Helix 129	AO3	N	649	665	Right-handed alpha
Helix 130	AO4	N	672	688	Right-handed alpha
Helix 131	AO5	N	692	707	Right-handed alpha
Helix 132	AO6	N	726	737	Right-handed alpha
Helix 133	AO7	N	742	751	Right-handed 310
Helix 134	AO8	N	789	819	Right-handed alpha
Helix 135	AO9	N	820	822	Right-handed 310
Helix 136	AP1	N	875	880	Right-handed alpha
Helix 137	AP2	N	919	925	Right-handed alpha
Helix 138	AP3	S	19	42	Right-handed alpha
Helix 139	AP4	S	47	65	Right-handed alpha
Helix 140	AP5	S	71	79	Right-handed alpha
Helix 141	AP6	S	84	96	Right-handed alpha
Helix 142	AP7	S	119	126	Right-handed alpha
Helix 143	AP8	S	130	150	Right-handed alpha
Helix 144	AP9	S	152	170	Right-handed alpha
Helix 145	AQ1	S	173	198	Right-handed alpha
Helix 146	AQ2	S	200	225	Right-handed alpha
Helix 147	AQ3	S	226	244	Right-handed alpha
Helix 148	AQ4	S	246	255	Right-handed alpha
Helix 149	AQ5	S	265	283	Right-handed alpha
Helix 150	AQ6	S	286	300	Right-handed alpha
Helix 151	AQ7	S	306	325	Right-handed alpha
Helix 152	AQ8	S	329	335	Right-handed alpha
Helix 153	AQ9	S	342	355	Right-handed alpha
Helix 154	AR1	S	356	367	Right-handed alpha
Helix 155	AR2	S	367	374	Right-handed alpha
Helix 156	AR3	S	376	399	Right-handed alpha
Helix 157	AR4	S	404	411	Right-handed alpha
Helix 158	AR5	S	415	427	Right-handed alpha
Helix 159	AR6	S	455	489	Right-handed alpha
Helix 160	AR7	P	7	20	Right-handed alpha
Helix 161	AR8	P	20	31	Right-handed alpha
Helix 162	AR9	P	31	43	Right-handed alpha
Helix 163	AS1	P	47	68	Right-handed alpha
Helix 164	AS2	P	71	86	Right-handed alpha
Helix 165	AS3	P	91	108	Right-handed alpha
Helix 166	AS4	P	110	126	Right-handed alpha
Helix 167	AS5	P	131	150	Right-handed alpha
Helix 168	AS6	P	152	164	Right-handed alpha
Helix 169	AS7	P	172	191	Right-handed alpha
Helix 170	AS8	P	192	201	Right-handed alpha
Helix 171	AS9	P	204	209	Right-handed alpha
Helix 172	AT1	P	210	212	Right-handed 310
Helix 173	AT2	P	213	231	Right-handed alpha
Helix 174	AT3	P	233	246	Right-handed alpha
Helix 175	AT4	P	247	253	Right-handed alpha
Helix 176	AT5	P	253	271	Right-handed alpha
Helix 177	AT6	P	274	287	Right-handed alpha
Helix 178	AT7	P	287	293	Right-handed alpha
Helix 179	AT8	P	294	305	Right-handed alpha
Helix 180	AT9	P	310	323	Right-handed alpha
Helix 181	AU1	P	334	339	Right-handed alpha
Helix 182	AU2	P	340	356	Right-handed alpha
Helix 183	AU3	P	362	370	Right-handed alpha
Helix 184	AU4	P	372	387	Right-handed alpha
Helix 185	AU5	P	407	440	Right-handed alpha
Helix 186	AU6	Q	2	16	Right-handed alpha
Helix 187	AU7	Q	19	39	Right-handed alpha
Helix 188	AU8	Q	50	65	Right-handed alpha
Helix 189	AU9	Q	71	89	Right-handed alpha
Helix 190	AV1	Q	92	107	Right-handed alpha
Helix 191	AV2	Q	109	127	Right-handed alpha
Helix 192	AV3	Q	130	149	Right-handed alpha
Helix 193	AV4	Q	150	165	Right-handed alpha
Helix 194	AV5	Q	171	173	Right-handed 310
Helix 195	AV6	Q	174	188	Right-handed alpha
Helix 196	AV7	Q	191	204	Right-handed alpha
Helix 197	AV8	Q	211	229	Right-handed alpha
Helix 198	AV9	Q	231	249	Right-handed alpha
Helix 199	AW1	Q	254	273	Right-handed alpha
Helix 200	AW2	Q	275	282	Right-handed alpha
Helix 201	AW3	Q	293	309	Right-handed alpha
Helix 202	AW4	Q	310	321	Right-handed alpha
Helix 203	AW5	Q	321	328	Right-handed alpha
Helix 204	AW6	Q	328	352	Right-handed alpha
Helix 205	AW7	Q	359	367	Right-handed alpha
Helix 206	AW8	Q	369	384	Right-handed alpha
Helix 207	AW9	Q	406	430	Right-handed alpha
Helix 208	AX1	Q	431	433	Right-handed 310
Helix 209	AX2	R	21	35	Right-handed alpha
Helix 210	AX3	R	39	58	Right-handed alpha
Helix 211	AX4	R	59	70	Right-handed alpha
Helix 212	AX5	R	96	123	Right-handed alpha
Helix 213	AX6	R	128	145	Right-handed alpha
Helix 214	AX7	R	146	160	Right-handed alpha
Helix 215	AX8	R	163	182	Right-handed alpha
Helix 216	AX9	R	184	202	Right-handed alpha
Helix 217	AY1	R	203	221	Right-handed alpha
Helix 218	AY2	R	224	237	Right-handed alpha
Helix 219	AY3	R	245	261	Right-handed alpha
Helix 220	AY4	R	262	270	Right-handed alpha
Helix 221	AY5	R	273	280	Right-handed alpha
Helix 222	AY6	R	283	298	Right-handed alpha
Helix 223	AY7	R	303	315	Right-handed alpha
Helix 224	AY8	R	320	324	Right-handed 310
Helix 225	AY9	R	325	345	Right-handed alpha
Helix 226	AZ1	R	350	358	Right-handed alpha
Helix 227	AZ2	R	360	372	Right-handed alpha
Helix 228	AZ3	R	395	424	Right-handed alpha
Helix 229	AZ4	U	11	25	Right-handed alpha
Helix 230	AZ5	U	69	84	Right-handed alpha
Helix 231	AZ6	U	102	112	Right-handed alpha
Helix 232	AZ7	U	164	175	Right-handed alpha
Helix 233	AZ8	U	185	215	Right-handed alpha
Helix 234	AZ9	U	222	235	Right-handed alpha
Helix 235	BA1	U	242	298	Right-handed alpha
Helix 236	BA2	O	7	18	Right-handed alpha
Helix 237	BA3	O	22	36	Right-handed alpha
Helix 238	BA4	O	37	52	Right-handed alpha
Helix 239	BA5	O	57	69	Right-handed alpha
Helix 240	BA6	O	74	89	Right-handed alpha
Helix 241	BA7	O	91	118	Right-handed alpha
Helix 242	BA8	O	122	140	Right-handed alpha
Helix 243	BA9	O	142	160	Right-handed alpha
Helix 244	BB1	O	164	183	Right-handed alpha
Helix 245	BB2	O	184	198	Right-handed alpha
Helix 246	BB3	O	206	224	Right-handed alpha
Helix 247	BB4	O	229	235	Right-handed alpha
Helix 248	BB5	O	236	241	Right-handed alpha
Helix 249	BB6	O	245	248	Right-handed 310
Helix 250	BB7	O	249	261	Right-handed alpha
Helix 251	BB8	O	262	277	Right-handed alpha
Helix 252	BB9	O	277	283	Right-handed alpha
Helix 253	BC1	O	283	303	Right-handed alpha
Helix 254	BC2	O	310	318	Right-handed alpha
Helix 255	BC3	O	320	334	Right-handed alpha
Helix 256	BC4	O	360	387	Right-handed alpha

There are 16 sheets in PDB entry 5MPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	61	66	first strand
Strand 2	W	48	53	anti-parallel
Strand 3	W	4	10	parallel
Strand 4	W	107	114	parallel
Strand 5	W	138	143	parallel
Strand 6	W	170	173	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	153	156	first strand
Strand 2	V	137	141	anti-parallel
Strand 3	V	103	110	parallel
Strand 4	V	50	58	anti-parallel
Strand 5	V	62	70	anti-parallel
Strand 6	V	26	30	parallel
Strand 7	V	201	204	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	8	10	first strand
Strand 2	X	31	35	anti-parallel
Strand 3	X	48	52	anti-parallel
Strand 4	X	65	66	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	15	first strand
Strand 2	X	97	100	anti-parallel
Strand 3	X	86	91	anti-parallel
Strand 4	X	73	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	927	929	first strand
Strand 2	Z	905	908	anti-parallel
Strand 3	Z	943	946	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	952	956	first strand
Strand 2	Z	966	969	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	713	715	first strand
Strand 2	N	753	755	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	758	762	first strand
Strand 2	N	901	907	parallel
Strand 3	N	890	892	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	768	769	first strand
Strand 2	N	916	917	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	866	869	first strand
Strand 2	N	772	775	anti-parallel
Strand 3	N	882	884	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	401	403	first strand
Strand 2	S	442	445	anti-parallel
Strand 3	S	434	437	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	399	401	first strand
Strand 2	P	357	361	anti-parallel
Strand 3	O	338	342	parallel
Strand 4	O	347	352	anti-parallel
Strand 5	O	308	309	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	357	358	first strand
Strand 2	Q	396	399	anti-parallel
Strand 3	Q	388	391	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	347	349	first strand
Strand 2	R	387	389	anti-parallel
Strand 3	R	380	381	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	7	10	first strand
Strand 2	U	45	53	parallel
Strand 3	U	34	40	anti-parallel
Strand 4	U	88	94	anti-parallel
Strand 5	U	119	123	parallel
Strand 6	U	134	145	anti-parallel
Strand 7	U	149	157	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	56	58	first strand
Strand 2	U	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPD