Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MPE entry

There are 13 chains in PDB entry 5MPE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
W	MET 1	SER 197
V	THR 18	LYS 306
T	LEU 7	ASN 272
X	VAL 7	SER 133
Y	THR 17	GLN 89
Z	MET 1	TYR 970
N	THR 4	ASP 925
S	LEU 18	LYS 492
P	MET 1	HIS 440
Q	MET 1	TYR 434
R	ARG 20	THR 424
U	MET 1	ASN 298
O	GLU 6	VAL 393

There are260 helices in PDB entry 5MPE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	W	24	44	Right-handed alpha
Helix 2	AA2	W	68	78	Right-handed alpha
Helix 3	AA3	W	86	99	Right-handed alpha
Helix 4	AA4	W	121	135	Right-handed alpha
Helix 5	AA5	W	145	149	Right-handed 310
Helix 6	AA6	W	153	162	Right-handed alpha
Helix 7	AA7	W	180	188	Right-handed alpha
Helix 8	AA8	V	30	45	Right-handed alpha
Helix 9	AA9	V	84	98	Right-handed alpha
Helix 10	AB1	V	119	133	Right-handed alpha
Helix 11	AB2	V	143	148	Right-handed 310
Helix 12	AB3	V	160	166	Right-handed alpha
Helix 13	AB4	V	168	174	Right-handed 310
Helix 14	AB5	V	185	194	Right-handed alpha
Helix 15	AB6	V	206	215	Right-handed alpha
Helix 16	AB7	V	229	255	Right-handed alpha
Helix 17	AB8	V	262	270	Right-handed alpha
Helix 18	AB9	V	275	306	Right-handed alpha
Helix 19	AC1	T	8	18	Right-handed alpha
Helix 20	AC2	T	19	41	Right-handed alpha
Helix 21	AC3	T	48	72	Right-handed alpha
Helix 22	AC4	T	74	91	Right-handed alpha
Helix 23	AC5	T	99	116	Right-handed alpha
Helix 24	AC6	T	118	130	Right-handed alpha
Helix 25	AC7	T	131	133	Right-handed 310
Helix 26	AC8	T	142	155	Right-handed alpha
Helix 27	AC9	T	156	167	Right-handed alpha
Helix 28	AD1	T	168	170	Right-handed 310
Helix 29	AD2	T	174	197	Right-handed alpha
Helix 30	AD3	T	201	210	Right-handed alpha
Helix 31	AD4	T	213	224	Right-handed alpha
Helix 32	AD5	T	235	248	Right-handed alpha
Helix 33	AD6	T	252	257	Right-handed alpha
Helix 34	AD7	T	258	271	Right-handed alpha
Helix 35	AD8	X	118	131	Right-handed alpha
Helix 36	AD9	Y	18	31	Right-handed alpha
Helix 37	AE1	Y	36	42	Right-handed alpha
Helix 38	AE2	Y	71	88	Right-handed alpha
Helix 39	AE3	Z	10	19	Right-handed alpha
Helix 40	AE4	Z	24	34	Right-handed alpha
Helix 41	AE5	Z	35	42	Right-handed alpha
Helix 42	AE6	Z	44	58	Right-handed alpha
Helix 43	AE7	Z	61	66	Right-handed alpha
Helix 44	AE8	Z	70	75	Right-handed alpha
Helix 45	AE9	Z	85	90	Right-handed alpha
Helix 46	AF1	Z	95	104	Right-handed alpha
Helix 47	AF2	Z	108	127	Right-handed alpha
Helix 48	AF3	Z	131	141	Right-handed alpha
Helix 49	AF4	Z	148	164	Right-handed alpha
Helix 50	AF5	Z	164	170	Right-handed alpha
Helix 51	AF6	Z	185	188	Right-handed 310
Helix 52	AF7	Z	189	203	Right-handed alpha
Helix 53	AF8	Z	207	216	Right-handed alpha
Helix 54	AF9	Z	217	232	Right-handed alpha
Helix 55	AG1	Z	237	252	Right-handed alpha
Helix 56	AG2	Z	257	275	Right-handed alpha
Helix 57	AG3	Z	277	289	Right-handed alpha
Helix 58	AG4	Z	290	303	Right-handed alpha
Helix 59	AG5	Z	308	321	Right-handed alpha
Helix 60	AG6	Z	325	332	Right-handed alpha
Helix 61	AG7	Z	333	339	Right-handed alpha
Helix 62	AG8	Z	342	350	Right-handed alpha
Helix 63	AG9	Z	351	366	Right-handed alpha
Helix 64	AH1	Z	378	391	Right-handed alpha
Helix 65	AH2	Z	397	402	Right-handed alpha
Helix 66	AH3	Z	404	409	Right-handed alpha
Helix 67	AH4	Z	413	424	Right-handed alpha
Helix 68	AH5	Z	425	427	Right-handed 310
Helix 69	AH6	Z	432	441	Right-handed alpha
Helix 70	AH7	Z	444	459	Right-handed alpha
Helix 71	AH8	Z	469	480	Right-handed alpha
Helix 72	AH9	Z	482	498	Right-handed alpha
Helix 73	AI1	Z	502	510	Right-handed alpha
Helix 74	AI2	Z	520	523	Right-handed 310
Helix 75	AI3	Z	524	535	Right-handed alpha
Helix 76	AI4	Z	543	556	Right-handed alpha
Helix 77	AI5	Z	559	575	Right-handed alpha
Helix 78	AI6	Z	582	589	Right-handed alpha
Helix 79	AI7	Z	593	608	Right-handed alpha
Helix 80	AI8	Z	614	635	Right-handed alpha
Helix 81	AI9	Z	701	727	Right-handed alpha
Helix 82	AJ1	Z	728	750	Right-handed alpha
Helix 83	AJ2	Z	750	769	Right-handed alpha
Helix 84	AJ3	Z	775	787	Right-handed alpha
Helix 85	AJ4	Z	790	800	Right-handed alpha
Helix 86	AJ5	Z	806	822	Right-handed alpha
Helix 87	AJ6	Z	825	840	Right-handed alpha
Helix 88	AJ7	Z	864	869	Right-handed alpha
Helix 89	AJ8	Z	877	884	Right-handed 310
Helix 90	AJ9	N	6	15	Right-handed alpha
Helix 91	AK1	N	17	30	Right-handed alpha
Helix 92	AK2	N	37	41	Right-handed 310
Helix 93	AK3	N	43	52	Right-handed alpha
Helix 94	AK4	N	57	73	Right-handed alpha
Helix 95	AK5	N	74	86	Right-handed alpha
Helix 96	AK6	N	89	94	Right-handed alpha
Helix 97	AK7	N	99	118	Right-handed alpha
Helix 98	AK8	N	130	148	Right-handed alpha
Helix 99	AK9	N	150	161	Right-handed alpha
Helix 100	AL1	N	163	173	Right-handed alpha
Helix 101	AL2	N	178	197	Right-handed alpha
Helix 102	AL3	N	199	217	Right-handed alpha
Helix 103	AL4	N	222	233	Right-handed alpha
Helix 104	AL5	N	234	246	Right-handed alpha
Helix 105	AL6	N	250	265	Right-handed alpha
Helix 106	AL7	N	266	281	Right-handed alpha
Helix 107	AL8	N	283	292	Right-handed alpha
Helix 108	AL9	N	292	307	Right-handed alpha
Helix 109	AM1	N	311	321	Right-handed alpha
Helix 110	AM2	N	325	340	Right-handed alpha
Helix 111	AM3	N	346	352	Right-handed alpha
Helix 112	AM4	N	352	358	Right-handed alpha
Helix 113	AM5	N	361	375	Right-handed alpha
Helix 114	AM6	N	378	387	Right-handed alpha
Helix 115	AM7	N	397	413	Right-handed alpha
Helix 116	AM8	N	418	430	Right-handed alpha
Helix 117	AM9	N	436	454	Right-handed alpha
Helix 118	AN1	N	459	473	Right-handed alpha
Helix 119	AN2	N	476	489	Right-handed alpha
Helix 120	AN3	N	494	508	Right-handed alpha
Helix 121	AN4	N	510	525	Right-handed alpha
Helix 122	AN5	N	528	531	Right-handed 310
Helix 123	AN6	N	532	542	Right-handed alpha
Helix 124	AN7	N	544	559	Right-handed alpha
Helix 125	AN8	N	564	578	Right-handed alpha
Helix 126	AN9	N	580	595	Right-handed alpha
Helix 127	AO1	N	601	606	Right-handed alpha
Helix 128	AO2	N	606	612	Right-handed alpha
Helix 129	AO3	N	614	629	Right-handed alpha
Helix 130	AO4	N	634	646	Right-handed alpha
Helix 131	AO5	N	649	664	Right-handed alpha
Helix 132	AO6	N	673	688	Right-handed alpha
Helix 133	AO7	N	692	707	Right-handed alpha
Helix 134	AO8	N	708	711	Right-handed 310
Helix 135	AO9	N	726	738	Right-handed alpha
Helix 136	AP1	N	742	751	Right-handed 310
Helix 137	AP2	N	779	783	Right-handed 310
Helix 138	AP3	N	789	821	Right-handed alpha
Helix 139	AP4	N	875	880	Right-handed alpha
Helix 140	AP5	N	919	925	Right-handed alpha
Helix 141	AP6	S	19	42	Right-handed alpha
Helix 142	AP7	S	47	65	Right-handed alpha
Helix 143	AP8	S	71	79	Right-handed alpha
Helix 144	AP9	S	84	96	Right-handed alpha
Helix 145	AQ1	S	119	126	Right-handed alpha
Helix 146	AQ2	S	131	150	Right-handed alpha
Helix 147	AQ3	S	152	168	Right-handed alpha
Helix 148	AQ4	S	173	198	Right-handed alpha
Helix 149	AQ5	S	200	224	Right-handed alpha
Helix 150	AQ6	S	226	245	Right-handed alpha
Helix 151	AQ7	S	246	255	Right-handed alpha
Helix 152	AQ8	S	265	283	Right-handed alpha
Helix 153	AQ9	S	286	300	Right-handed alpha
Helix 154	AR1	S	306	325	Right-handed alpha
Helix 155	AR2	S	330	336	Right-handed alpha
Helix 156	AR3	S	342	355	Right-handed alpha
Helix 157	AR4	S	356	367	Right-handed alpha
Helix 158	AR5	S	367	374	Right-handed alpha
Helix 159	AR6	S	376	399	Right-handed alpha
Helix 160	AR7	S	404	411	Right-handed alpha
Helix 161	AR8	S	415	430	Right-handed alpha
Helix 162	AR9	S	455	489	Right-handed alpha
Helix 163	AS1	P	4	20	Right-handed alpha
Helix 164	AS2	P	20	29	Right-handed alpha
Helix 165	AS3	P	31	43	Right-handed alpha
Helix 166	AS4	P	47	68	Right-handed alpha
Helix 167	AS5	P	71	79	Right-handed alpha
Helix 168	AS6	P	80	86	Right-handed alpha
Helix 169	AS7	P	91	108	Right-handed alpha
Helix 170	AS8	P	110	126	Right-handed alpha
Helix 171	AS9	P	131	150	Right-handed alpha
Helix 172	AT1	P	152	164	Right-handed alpha
Helix 173	AT2	P	172	191	Right-handed alpha
Helix 174	AT3	P	192	201	Right-handed alpha
Helix 175	AT4	P	206	210	Right-handed 310
Helix 176	AT5	P	213	231	Right-handed alpha
Helix 177	AT6	P	233	247	Right-handed alpha
Helix 178	AT7	P	247	253	Right-handed alpha
Helix 179	AT8	P	253	271	Right-handed alpha
Helix 180	AT9	P	274	287	Right-handed alpha
Helix 181	AU1	P	288	293	Right-handed 310
Helix 182	AU2	P	294	304	Right-handed alpha
Helix 183	AU3	P	310	319	Right-handed alpha
Helix 184	AU4	P	331	339	Right-handed alpha
Helix 185	AU5	P	340	356	Right-handed alpha
Helix 186	AU6	P	362	370	Right-handed alpha
Helix 187	AU7	P	372	387	Right-handed alpha
Helix 188	AU8	P	407	440	Right-handed alpha
Helix 189	AU9	Q	2	16	Right-handed alpha
Helix 190	AV1	Q	19	39	Right-handed alpha
Helix 191	AV2	Q	50	66	Right-handed alpha
Helix 192	AV3	Q	71	78	Right-handed alpha
Helix 193	AV4	Q	80	89	Right-handed alpha
Helix 194	AV5	Q	92	107	Right-handed alpha
Helix 195	AV6	Q	109	124	Right-handed alpha
Helix 196	AV7	Q	130	148	Right-handed alpha
Helix 197	AV8	Q	150	162	Right-handed alpha
Helix 198	AV9	Q	171	188	Right-handed alpha
Helix 199	AW1	Q	191	205	Right-handed alpha
Helix 200	AW2	Q	211	229	Right-handed alpha
Helix 201	AW3	Q	233	249	Right-handed alpha
Helix 202	AW4	Q	254	273	Right-handed alpha
Helix 203	AW5	Q	275	282	Right-handed alpha
Helix 204	AW6	Q	286	291	Right-handed alpha
Helix 205	AW7	Q	293	309	Right-handed alpha
Helix 206	AW8	Q	310	320	Right-handed alpha
Helix 207	AW9	Q	321	328	Right-handed alpha
Helix 208	AX1	Q	328	352	Right-handed alpha
Helix 209	AX2	Q	359	367	Right-handed alpha
Helix 210	AX3	Q	369	384	Right-handed alpha
Helix 211	AX4	Q	406	432	Right-handed alpha
Helix 212	AX5	Q	433	434	Right-handed 310
Helix 213	AX6	R	20	20	Right-handed 310
Helix 214	AX7	R	21	35	Right-handed alpha
Helix 215	AX8	R	39	58	Right-handed alpha
Helix 216	AX9	R	59	69	Right-handed alpha
Helix 217	AY1	R	96	123	Right-handed alpha
Helix 218	AY2	R	128	145	Right-handed alpha
Helix 219	AY3	R	146	160	Right-handed alpha
Helix 220	AY4	R	163	182	Right-handed alpha
Helix 221	AY5	R	183	202	Right-handed alpha
Helix 222	AY6	R	204	221	Right-handed alpha
Helix 223	AY7	R	224	234	Right-handed alpha
Helix 224	AY8	R	245	261	Right-handed alpha
Helix 225	AY9	R	262	270	Right-handed alpha
Helix 226	AZ1	R	273	279	Right-handed alpha
Helix 227	AZ2	R	283	298	Right-handed alpha
Helix 228	AZ3	R	303	315	Right-handed alpha
Helix 229	AZ4	R	325	344	Right-handed alpha
Helix 230	AZ5	R	350	358	Right-handed alpha
Helix 231	AZ6	R	360	375	Right-handed alpha
Helix 232	AZ7	R	395	424	Right-handed alpha
Helix 233	AZ8	U	11	25	Right-handed alpha
Helix 234	AZ9	U	70	84	Right-handed alpha
Helix 235	BA1	U	102	114	Right-handed alpha
Helix 236	BA2	U	164	175	Right-handed alpha
Helix 237	BA3	U	185	215	Right-handed alpha
Helix 238	BA4	U	222	235	Right-handed alpha
Helix 239	BA5	U	241	298	Right-handed alpha
Helix 240	BA6	O	7	18	Right-handed alpha
Helix 241	BA7	O	22	36	Right-handed alpha
Helix 242	BA8	O	37	49	Right-handed alpha
Helix 243	BA9	O	56	68	Right-handed alpha
Helix 244	BB1	O	74	88	Right-handed alpha
Helix 245	BB2	O	92	118	Right-handed alpha
Helix 246	BB3	O	122	139	Right-handed alpha
Helix 247	BB4	O	142	160	Right-handed alpha
Helix 248	BB5	O	164	183	Right-handed alpha
Helix 249	BB6	O	184	198	Right-handed alpha
Helix 250	BB7	O	206	223	Right-handed alpha
Helix 251	BB8	O	229	235	Right-handed alpha
Helix 252	BB9	O	236	241	Right-handed alpha
Helix 253	BC1	O	245	248	Right-handed 310
Helix 254	BC2	O	249	261	Right-handed alpha
Helix 255	BC3	O	262	277	Right-handed alpha
Helix 256	BC4	O	278	283	Right-handed alpha
Helix 257	BC5	O	283	303	Right-handed alpha
Helix 258	BC6	O	310	318	Right-handed alpha
Helix 259	BC7	O	321	335	Right-handed alpha
Helix 260	BC8	O	359	387	Right-handed alpha

There are 16 sheets in PDB entry 5MPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	61	66	first strand
Strand 2	W	48	53	anti-parallel
Strand 3	W	4	10	parallel
Strand 4	W	107	114	parallel
Strand 5	W	138	143	parallel
Strand 6	W	171	173	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	196	198	first strand
Strand 2	V	153	158	anti-parallel
Strand 3	V	137	141	anti-parallel
Strand 4	V	104	110	parallel
Strand 5	V	49	58	anti-parallel
Strand 6	V	62	70	anti-parallel
Strand 7	V	26	29	parallel
Strand 8	V	201	202	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	8	10	first strand
Strand 2	X	31	36	anti-parallel
Strand 3	X	47	52	anti-parallel
Strand 4	X	65	67	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	15	first strand
Strand 2	X	97	100	anti-parallel
Strand 3	X	86	91	anti-parallel
Strand 4	X	73	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	894	895	first strand
Strand 2	Z	965	969	parallel
Strand 3	Z	952	956	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	927	929	first strand
Strand 2	Z	906	908	anti-parallel
Strand 3	Z	943	944	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	713	715	first strand
Strand 2	N	753	755	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	872	873	first strand
Strand 2	N	757	762	anti-parallel
Strand 3	N	902	906	parallel
Strand 4	N	891	892	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	768	769	first strand
Strand 2	N	916	917	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	865	869	first strand
Strand 2	N	772	776	anti-parallel
Strand 3	N	882	884	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	401	403	first strand
Strand 2	S	442	445	anti-parallel
Strand 3	S	434	437	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	391	392	first strand
Strand 2	P	399	402	anti-parallel
Strand 3	P	357	361	anti-parallel
Strand 4	O	337	342	parallel
Strand 5	O	347	353	anti-parallel
Strand 6	O	307	309	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	357	358	first strand
Strand 2	Q	396	399	anti-parallel
Strand 3	Q	388	391	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	347	349	first strand
Strand 2	R	387	390	anti-parallel
Strand 3	R	379	382	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	7	10	first strand
Strand 2	U	45	53	parallel
Strand 3	U	34	40	anti-parallel
Strand 4	U	88	94	anti-parallel
Strand 5	U	119	123	parallel
Strand 6	U	134	142	anti-parallel
Strand 7	U	151	157	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	57	58	first strand
Strand 2	U	66	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MPE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPE