Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPE entry

There are 13 chains in PDB entry 5MPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
W
MET 1SER 197
V
THR 18LYS 306
T
LEU 7ASN 272
X
VAL 7SER 133
Y
THR 17GLN 89
Z
MET 1TYR 970
N
THR 4ASP 925
S
LEU 18LYS 492
P
MET 1HIS 440
Q
MET 1TYR 434
R
ARG 20THR 424
U
MET 1ASN 298
O
GLU 6VAL 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are260 helices in PDB entry 5MPE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
W
24 44Right-handed alpha
Helix 2
AA2
W
68 78Right-handed alpha
Helix 3
AA3
W
86 99Right-handed alpha
Helix 4
AA4
W
121 135Right-handed alpha
Helix 5
AA5
W
145 149Right-handed 310
Helix 6
AA6
W
153 162Right-handed alpha
Helix 7
AA7
W
180 188Right-handed alpha
Helix 8
AA8
V
30 45Right-handed alpha
Helix 9
AA9
V
84 98Right-handed alpha
Helix 10
AB1
V
119 133Right-handed alpha
Helix 11
AB2
V
143 148Right-handed 310
Helix 12
AB3
V
160 166Right-handed alpha
Helix 13
AB4
V
168 174Right-handed 310
Helix 14
AB5
V
185 194Right-handed alpha
Helix 15
AB6
V
206 215Right-handed alpha
Helix 16
AB7
V
229 255Right-handed alpha
Helix 17
AB8
V
262 270Right-handed alpha
Helix 18
AB9
V
275 306Right-handed alpha
Helix 19
AC1
T
8 18Right-handed alpha
Helix 20
AC2
T
19 41Right-handed alpha
Helix 21
AC3
T
48 72Right-handed alpha
Helix 22
AC4
T
74 91Right-handed alpha
Helix 23
AC5
T
99 116Right-handed alpha
Helix 24
AC6
T
118 130Right-handed alpha
Helix 25
AC7
T
131 133Right-handed 310
Helix 26
AC8
T
142 155Right-handed alpha
Helix 27
AC9
T
156 167Right-handed alpha
Helix 28
AD1
T
168 170Right-handed 310
Helix 29
AD2
T
174 197Right-handed alpha
Helix 30
AD3
T
201 210Right-handed alpha
Helix 31
AD4
T
213 224Right-handed alpha
Helix 32
AD5
T
235 248Right-handed alpha
Helix 33
AD6
T
252 257Right-handed alpha
Helix 34
AD7
T
258 271Right-handed alpha
Helix 35
AD8
X
118 131Right-handed alpha
Helix 36
AD9
Y
18 31Right-handed alpha
Helix 37
AE1
Y
36 42Right-handed alpha
Helix 38
AE2
Y
71 88Right-handed alpha
Helix 39
AE3
Z
10 19Right-handed alpha
Helix 40
AE4
Z
24 34Right-handed alpha
Helix 41
AE5
Z
35 42Right-handed alpha
Helix 42
AE6
Z
44 58Right-handed alpha
Helix 43
AE7
Z
61 66Right-handed alpha
Helix 44
AE8
Z
70 75Right-handed alpha
Helix 45
AE9
Z
85 90Right-handed alpha
Helix 46
AF1
Z
95 104Right-handed alpha
Helix 47
AF2
Z
108 127Right-handed alpha
Helix 48
AF3
Z
131 141Right-handed alpha
Helix 49
AF4
Z
148 164Right-handed alpha
Helix 50
AF5
Z
164 170Right-handed alpha
Helix 51
AF6
Z
185 188Right-handed 310
Helix 52
AF7
Z
189 203Right-handed alpha
Helix 53
AF8
Z
207 216Right-handed alpha
Helix 54
AF9
Z
217 232Right-handed alpha
Helix 55
AG1
Z
237 252Right-handed alpha
Helix 56
AG2
Z
257 275Right-handed alpha
Helix 57
AG3
Z
277 289Right-handed alpha
Helix 58
AG4
Z
290 303Right-handed alpha
Helix 59
AG5
Z
308 321Right-handed alpha
Helix 60
AG6
Z
325 332Right-handed alpha
Helix 61
AG7
Z
333 339Right-handed alpha
Helix 62
AG8
Z
342 350Right-handed alpha
Helix 63
AG9
Z
351 366Right-handed alpha
Helix 64
AH1
Z
378 391Right-handed alpha
Helix 65
AH2
Z
397 402Right-handed alpha
Helix 66
AH3
Z
404 409Right-handed alpha
Helix 67
AH4
Z
413 424Right-handed alpha
Helix 68
AH5
Z
425 427Right-handed 310
Helix 69
AH6
Z
432 441Right-handed alpha
Helix 70
AH7
Z
444 459Right-handed alpha
Helix 71
AH8
Z
469 480Right-handed alpha
Helix 72
AH9
Z
482 498Right-handed alpha
Helix 73
AI1
Z
502 510Right-handed alpha
Helix 74
AI2
Z
520 523Right-handed 310
Helix 75
AI3
Z
524 535Right-handed alpha
Helix 76
AI4
Z
543 556Right-handed alpha
Helix 77
AI5
Z
559 575Right-handed alpha
Helix 78
AI6
Z
582 589Right-handed alpha
Helix 79
AI7
Z
593 608Right-handed alpha
Helix 80
AI8
Z
614 635Right-handed alpha
Helix 81
AI9
Z
701 727Right-handed alpha
Helix 82
AJ1
Z
728 750Right-handed alpha
Helix 83
AJ2
Z
750 769Right-handed alpha
Helix 84
AJ3
Z
775 787Right-handed alpha
Helix 85
AJ4
Z
790 800Right-handed alpha
Helix 86
AJ5
Z
806 822Right-handed alpha
Helix 87
AJ6
Z
825 840Right-handed alpha
Helix 88
AJ7
Z
864 869Right-handed alpha
Helix 89
AJ8
Z
877 884Right-handed 310
Helix 90
AJ9
N
6 15Right-handed alpha
Helix 91
AK1
N
17 30Right-handed alpha
Helix 92
AK2
N
37 41Right-handed 310
Helix 93
AK3
N
43 52Right-handed alpha
Helix 94
AK4
N
57 73Right-handed alpha
Helix 95
AK5
N
74 86Right-handed alpha
Helix 96
AK6
N
89 94Right-handed alpha
Helix 97
AK7
N
99 118Right-handed alpha
Helix 98
AK8
N
130 148Right-handed alpha
Helix 99
AK9
N
150 161Right-handed alpha
Helix 100
AL1
N
163 173Right-handed alpha
Helix 101
AL2
N
178 197Right-handed alpha
Helix 102
AL3
N
199 217Right-handed alpha
Helix 103
AL4
N
222 233Right-handed alpha
Helix 104
AL5
N
234 246Right-handed alpha
Helix 105
AL6
N
250 265Right-handed alpha
Helix 106
AL7
N
266 281Right-handed alpha
Helix 107
AL8
N
283 292Right-handed alpha
Helix 108
AL9
N
292 307Right-handed alpha
Helix 109
AM1
N
311 321Right-handed alpha
Helix 110
AM2
N
325 340Right-handed alpha
Helix 111
AM3
N
346 352Right-handed alpha
Helix 112
AM4
N
352 358Right-handed alpha
Helix 113
AM5
N
361 375Right-handed alpha
Helix 114
AM6
N
378 387Right-handed alpha
Helix 115
AM7
N
397 413Right-handed alpha
Helix 116
AM8
N
418 430Right-handed alpha
Helix 117
AM9
N
436 454Right-handed alpha
Helix 118
AN1
N
459 473Right-handed alpha
Helix 119
AN2
N
476 489Right-handed alpha
Helix 120
AN3
N
494 508Right-handed alpha
Helix 121
AN4
N
510 525Right-handed alpha
Helix 122
AN5
N
528 531Right-handed 310
Helix 123
AN6
N
532 542Right-handed alpha
Helix 124
AN7
N
544 559Right-handed alpha
Helix 125
AN8
N
564 578Right-handed alpha
Helix 126
AN9
N
580 595Right-handed alpha
Helix 127
AO1
N
601 606Right-handed alpha
Helix 128
AO2
N
606 612Right-handed alpha
Helix 129
AO3
N
614 629Right-handed alpha
Helix 130
AO4
N
634 646Right-handed alpha
Helix 131
AO5
N
649 664Right-handed alpha
Helix 132
AO6
N
673 688Right-handed alpha
Helix 133
AO7
N
692 707Right-handed alpha
Helix 134
AO8
N
708 711Right-handed 310
Helix 135
AO9
N
726 738Right-handed alpha
Helix 136
AP1
N
742 751Right-handed 310
Helix 137
AP2
N
779 783Right-handed 310
Helix 138
AP3
N
789 821Right-handed alpha
Helix 139
AP4
N
875 880Right-handed alpha
Helix 140
AP5
N
919 925Right-handed alpha
Helix 141
AP6
S
19 42Right-handed alpha
Helix 142
AP7
S
47 65Right-handed alpha
Helix 143
AP8
S
71 79Right-handed alpha
Helix 144
AP9
S
84 96Right-handed alpha
Helix 145
AQ1
S
119 126Right-handed alpha
Helix 146
AQ2
S
131 150Right-handed alpha
Helix 147
AQ3
S
152 168Right-handed alpha
Helix 148
AQ4
S
173 198Right-handed alpha
Helix 149
AQ5
S
200 224Right-handed alpha
Helix 150
AQ6
S
226 245Right-handed alpha
Helix 151
AQ7
S
246 255Right-handed alpha
Helix 152
AQ8
S
265 283Right-handed alpha
Helix 153
AQ9
S
286 300Right-handed alpha
Helix 154
AR1
S
306 325Right-handed alpha
Helix 155
AR2
S
330 336Right-handed alpha
Helix 156
AR3
S
342 355Right-handed alpha
Helix 157
AR4
S
356 367Right-handed alpha
Helix 158
AR5
S
367 374Right-handed alpha
Helix 159
AR6
S
376 399Right-handed alpha
Helix 160
AR7
S
404 411Right-handed alpha
Helix 161
AR8
S
415 430Right-handed alpha
Helix 162
AR9
S
455 489Right-handed alpha
Helix 163
AS1
P
4 20Right-handed alpha
Helix 164
AS2
P
20 29Right-handed alpha
Helix 165
AS3
P
31 43Right-handed alpha
Helix 166
AS4
P
47 68Right-handed alpha
Helix 167
AS5
P
71 79Right-handed alpha
Helix 168
AS6
P
80 86Right-handed alpha
Helix 169
AS7
P
91 108Right-handed alpha
Helix 170
AS8
P
110 126Right-handed alpha
Helix 171
AS9
P
131 150Right-handed alpha
Helix 172
AT1
P
152 164Right-handed alpha
Helix 173
AT2
P
172 191Right-handed alpha
Helix 174
AT3
P
192 201Right-handed alpha
Helix 175
AT4
P
206 210Right-handed 310
Helix 176
AT5
P
213 231Right-handed alpha
Helix 177
AT6
P
233 247Right-handed alpha
Helix 178
AT7
P
247 253Right-handed alpha
Helix 179
AT8
P
253 271Right-handed alpha
Helix 180
AT9
P
274 287Right-handed alpha
Helix 181
AU1
P
288 293Right-handed 310
Helix 182
AU2
P
294 304Right-handed alpha
Helix 183
AU3
P
310 319Right-handed alpha
Helix 184
AU4
P
331 339Right-handed alpha
Helix 185
AU5
P
340 356Right-handed alpha
Helix 186
AU6
P
362 370Right-handed alpha
Helix 187
AU7
P
372 387Right-handed alpha
Helix 188
AU8
P
407 440Right-handed alpha
Helix 189
AU9
Q
2 16Right-handed alpha
Helix 190
AV1
Q
19 39Right-handed alpha
Helix 191
AV2
Q
50 66Right-handed alpha
Helix 192
AV3
Q
71 78Right-handed alpha
Helix 193
AV4
Q
80 89Right-handed alpha
Helix 194
AV5
Q
92 107Right-handed alpha
Helix 195
AV6
Q
109 124Right-handed alpha
Helix 196
AV7
Q
130 148Right-handed alpha
Helix 197
AV8
Q
150 162Right-handed alpha
Helix 198
AV9
Q
171 188Right-handed alpha
Helix 199
AW1
Q
191 205Right-handed alpha
Helix 200
AW2
Q
211 229Right-handed alpha
Helix 201
AW3
Q
233 249Right-handed alpha
Helix 202
AW4
Q
254 273Right-handed alpha
Helix 203
AW5
Q
275 282Right-handed alpha
Helix 204
AW6
Q
286 291Right-handed alpha
Helix 205
AW7
Q
293 309Right-handed alpha
Helix 206
AW8
Q
310 320Right-handed alpha
Helix 207
AW9
Q
321 328Right-handed alpha
Helix 208
AX1
Q
328 352Right-handed alpha
Helix 209
AX2
Q
359 367Right-handed alpha
Helix 210
AX3
Q
369 384Right-handed alpha
Helix 211
AX4
Q
406 432Right-handed alpha
Helix 212
AX5
Q
433 434Right-handed 310
Helix 213
AX6
R
20 20Right-handed 310
Helix 214
AX7
R
21 35Right-handed alpha
Helix 215
AX8
R
39 58Right-handed alpha
Helix 216
AX9
R
59 69Right-handed alpha
Helix 217
AY1
R
96 123Right-handed alpha
Helix 218
AY2
R
128 145Right-handed alpha
Helix 219
AY3
R
146 160Right-handed alpha
Helix 220
AY4
R
163 182Right-handed alpha
Helix 221
AY5
R
183 202Right-handed alpha
Helix 222
AY6
R
204 221Right-handed alpha
Helix 223
AY7
R
224 234Right-handed alpha
Helix 224
AY8
R
245 261Right-handed alpha
Helix 225
AY9
R
262 270Right-handed alpha
Helix 226
AZ1
R
273 279Right-handed alpha
Helix 227
AZ2
R
283 298Right-handed alpha
Helix 228
AZ3
R
303 315Right-handed alpha
Helix 229
AZ4
R
325 344Right-handed alpha
Helix 230
AZ5
R
350 358Right-handed alpha
Helix 231
AZ6
R
360 375Right-handed alpha
Helix 232
AZ7
R
395 424Right-handed alpha
Helix 233
AZ8
U
11 25Right-handed alpha
Helix 234
AZ9
U
70 84Right-handed alpha
Helix 235
BA1
U
102 114Right-handed alpha
Helix 236
BA2
U
164 175Right-handed alpha
Helix 237
BA3
U
185 215Right-handed alpha
Helix 238
BA4
U
222 235Right-handed alpha
Helix 239
BA5
U
241 298Right-handed alpha
Helix 240
BA6
O
7 18Right-handed alpha
Helix 241
BA7
O
22 36Right-handed alpha
Helix 242
BA8
O
37 49Right-handed alpha
Helix 243
BA9
O
56 68Right-handed alpha
Helix 244
BB1
O
74 88Right-handed alpha
Helix 245
BB2
O
92 118Right-handed alpha
Helix 246
BB3
O
122 139Right-handed alpha
Helix 247
BB4
O
142 160Right-handed alpha
Helix 248
BB5
O
164 183Right-handed alpha
Helix 249
BB6
O
184 198Right-handed alpha
Helix 250
BB7
O
206 223Right-handed alpha
Helix 251
BB8
O
229 235Right-handed alpha
Helix 252
BB9
O
236 241Right-handed alpha
Helix 253
BC1
O
245 248Right-handed 310
Helix 254
BC2
O
249 261Right-handed alpha
Helix 255
BC3
O
262 277Right-handed alpha
Helix 256
BC4
O
278 283Right-handed alpha
Helix 257
BC5
O
283 303Right-handed alpha
Helix 258
BC6
O
310 318Right-handed alpha
Helix 259
BC7
O
321 335Right-handed alpha
Helix 260
BC8
O
359 387Right-handed alpha
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There are 16 sheets in PDB entry 5MPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
61 66first strand
Strand 2
W
48 53anti-parallel
Strand 3
W
4 10parallel
Strand 4
W
107 114parallel
Strand 5
W
138 143parallel
Strand 6
W
171 173parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
196 198first strand
Strand 2
V
153 158anti-parallel
Strand 3
V
137 141anti-parallel
Strand 4
V
104 110parallel
Strand 5
V
49 58anti-parallel
Strand 6
V
62 70anti-parallel
Strand 7
V
26 29parallel
Strand 8
V
201 202parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
8 10first strand
Strand 2
X
31 36anti-parallel
Strand 3
X
47 52anti-parallel
Strand 4
X
65 67anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
13 15first strand
Strand 2
X
97 100anti-parallel
Strand 3
X
86 91anti-parallel
Strand 4
X
73 76anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
894 895first strand
Strand 2
Z
965 969parallel
Strand 3
Z
952 956anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
927 929first strand
Strand 2
Z
906 908anti-parallel
Strand 3
Z
943 944anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
713 715first strand
Strand 2
N
753 755anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
872 873first strand
Strand 2
N
757 762anti-parallel
Strand 3
N
902 906parallel
Strand 4
N
891 892anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
768 769first strand
Strand 2
N
916 917anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
865 869first strand
Strand 2
N
772 776anti-parallel
Strand 3
N
882 884anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
401 403first strand
Strand 2
S
442 445anti-parallel
Strand 3
S
434 437anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
391 392first strand
Strand 2
P
399 402anti-parallel
Strand 3
P
357 361anti-parallel
Strand 4
O
337 342parallel
Strand 5
O
347 353anti-parallel
Strand 6
O
307 309anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
357 358first strand
Strand 2
Q
396 399anti-parallel
Strand 3
Q
388 391anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
347 349first strand
Strand 2
R
387 390anti-parallel
Strand 3
R
379 382anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
7 10first strand
Strand 2
U
45 53parallel
Strand 3
U
34 40anti-parallel
Strand 4
U
88 94anti-parallel
Strand 5
U
119 123parallel
Strand 6
U
134 142anti-parallel
Strand 7
U
151 157anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
57 58first strand
Strand 2
U
66 67anti-parallel
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