Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPF entry

There are 4 chains in PDB entry 5MPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 250HIS 478
B
 ASN 250VAL 477
E
 A 1 T 12
F
 A 1 T 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5MPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
313 327Right-handed alpha
Helix 2
AA2
A
341 346Right-handed alpha
Helix 3
AA3
A
423 434Right-handed alpha
Helix 4
AA4
B
313 328Right-handed alpha
Helix 5
AA5
B
341 346Right-handed alpha
Helix 6
AA6
B
423 439Right-handed alpha
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There are 6 sheets in PDB entry 5MPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
369 375anti-parallel
Strand 3
A
280 287anti-parallel
Strand 4
A
251 257anti-parallel
Strand 5
A
457 459anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
411 420parallel
Strand 3
A
393 399anti-parallel
Strand 4
A
299 308anti-parallel
Strand 5
A
358 364anti-parallel
Strand 6
A
348 355anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
411 420parallel
Strand 3
A
461 462anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
369 375anti-parallel
Strand 3
B
280 286anti-parallel
Strand 4
B
252 257anti-parallel
Strand 5
B
457 459anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
272 275anti-parallel
Strand 3
B
416 420parallel
Strand 4
B
393 400anti-parallel
Strand 5
B
299 308anti-parallel
Strand 6
B
358 364anti-parallel
Strand 7
B
348 355anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
272 275anti-parallel
Strand 3
B
416 420parallel
Strand 4
B
393 400anti-parallel
Strand 5
B
411 414anti-parallel
Strand 6
B
461 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il