Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPM entry

There is 1 chain in PDB entry 5MPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 992
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5MPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
8 17Right-handed alpha
Helix 3
AA3
A
25 37Right-handed alpha
Helix 4
AA4
A
48 58Right-handed alpha
Helix 5
AA5
A
59 76Right-handed alpha
Helix 6
AA6
A
83 88Right-handed alpha
Helix 7
AA7
A
88 110Right-handed alpha
Helix 8
AA8
A
114 120Right-handed alpha
Helix 9
AA9
A
121 123Right-handed 310
Helix 10
AB1
A
143 145Right-handed 310
Helix 11
AB2
A
177 182Right-handed alpha
Helix 12
AB3
A
200 204Right-handed 310
Helix 13
AB4
A
226 229Right-handed 310
Helix 14
AB5
A
230 240Right-handed alpha
Helix 15
AB6
A
247 275Right-handed alpha
Helix 16
AB7
A
290 307Right-handed alpha
Helix 17
AB8
A
310 328Right-handed alpha
Helix 18
AB9
A
337 342Right-handed alpha
Helix 19
AC1
A
403 406Right-handed 310
Helix 20
AC2
A
407 420Right-handed alpha
Helix 21
AC3
A
439 453Right-handed alpha
Helix 22
AC4
A
465 478Right-handed alpha
Helix 23
AC5
A
516 522Right-handed alpha
Helix 24
AC6
A
537 553Right-handed alpha
Helix 25
AC7
A
579 581Right-handed 310
Helix 26
AC8
A
582 587Right-handed alpha
Helix 27
AC9
A
605 616Right-handed alpha
Helix 28
AD1
A
627 638Right-handed alpha
Helix 29
AD2
A
654 660Right-handed alpha
Helix 30
AD3
A
661 672Right-handed alpha
Helix 31
AD4
A
679 693Right-handed alpha
Helix 32
AD5
A
706 713Right-handed alpha
Helix 33
AD6
A
723 729Right-handed alpha
Helix 34
AD7
A
739 781Right-handed alpha
Helix 35
AD8
A
787 807Right-handed alpha
Helix 36
AD9
A
814 818Right-handed 310
Helix 37
AE1
A
829 857Right-handed alpha
Helix 38
AE2
A
865 871Right-handed alpha
Helix 39
AE3
A
872 875Right-handed 310
Helix 40
AE4
A
888 891Right-handed 310
Helix 41
AE5
A
892 914Right-handed alpha
Helix 42
AE6
A
925 928Right-handed 310
Helix 43
AE7
A
929 949Right-handed alpha
Helix 44
AE8
A
951 957Right-handed alpha
Helix 45
AE9
A
963 974Right-handed alpha
Helix 46
AF1
A
974 990Right-handed alpha
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There are 8 sheets in PDB entry 5MPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
138 141anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
219 225anti-parallel
Strand 3
A
162 165anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
715 719parallel
Strand 4
A
697 701parallel
Strand 5
A
347 350parallel
Strand 6
A
619 622parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
376 384anti-parallel
Strand 3
A
361 373anti-parallel
Strand 4
A
591 600anti-parallel
Strand 5
A
559 566anti-parallel
Strand 6
A
510 515anti-parallel
Strand 7
A
493 500anti-parallel
Strand 8
A
479 485anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
434 437anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 535first strand
Strand 2
A
524 529anti-parallel
Strand 3
A
590 592parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 653first strand
Strand 2
A
674 676parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il