Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPO entry

There are 4 chains in PDB entry 5MPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLY 87
B
 SER 5GLY 88
C
 GLU 40GLU 171
D
 GLU 41GLU 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5MPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
46 55Right-handed 310
Helix 4
AA4
B
13 20Right-handed alpha
Helix 5
AA5
B
34 45Right-handed alpha
Helix 6
AA6
B
46 55Right-handed 310
Helix 7
AA7
C
55 64Right-handed alpha
Helix 8
AA8
C
97 114Right-handed alpha
Helix 9
AA9
C
143 162Right-handed alpha
Helix 10
AB1
D
55 62Right-handed alpha
Helix 11
AB2
D
97 114Right-handed alpha
Helix 12
AB3
D
143 162Right-handed alpha
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There are 9 sheets in PDB entry 5MPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
6 11anti-parallel
Strand 3
A
78 82parallel
Strand 4
A
56 59anti-parallel
Strand 5
A
62 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
70 72anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
6 11anti-parallel
Strand 3
B
78 82parallel
Strand 4
B
56 59anti-parallel
Strand 5
B
62 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
70 72anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
116 124parallel
Strand 3
C
133 141anti-parallel
Strand 4
C
70 77anti-parallel
Strand 5
D
70 77anti-parallel
Strand 6
D
133 141anti-parallel
Strand 7
D
116 124anti-parallel
Strand 8
D
45 50parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 82first strand
Strand 2
C
85 94anti-parallel
Strand 3
C
126 129anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 82first strand
Strand 2
C
85 94anti-parallel
Strand 3
C
164 170anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 82first strand
Strand 2
D
85 94anti-parallel
Strand 3
D
126 129anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 82first strand
Strand 2
D
85 94anti-parallel
Strand 3
D
164 170anti-parallel
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