Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPT entry

There is 1 chain in PDB entry 5MPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1785PRO 2163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1791 1805Right-handed alpha
Helix 2
AA2
A
1805 1813Right-handed alpha
Helix 3
AA3
A
1817 1822Right-handed alpha
Helix 4
AA4
A
1822 1841Right-handed alpha
Helix 5
AA5
A
1860 1862Right-handed 310
Helix 6
AA6
A
1863 1877Right-handed alpha
Helix 7
AA7
A
1898 1910Right-handed alpha
Helix 8
AA8
A
1913 1925Right-handed alpha
Helix 9
AA9
A
1926 1932Right-handed alpha
Helix 10
AB1
A
1936 1943Right-handed alpha
Helix 11
AB2
A
1944 1957Right-handed alpha
Helix 12
AB3
A
1958 1977Right-handed alpha
Helix 13
AB4
A
1998 2010Right-handed alpha
Helix 14
AB5
A
2021 2032Right-handed alpha
Helix 15
AB6
A
2050 2054Right-handed 310
Helix 16
AB7
A
2065 2069Right-handed 310
Helix 17
AB8
A
2071 2082Right-handed alpha
Helix 18
AB9
A
2098 2106Right-handed alpha
Helix 19
AC1
A
2107 2112Right-handed 310
Helix 20
AC2
A
2124 2135Right-handed alpha
Helix 21
AC3
A
2147 2151Right-handed 310
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There are 2 sheets in PDB entry 5MPT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1853 1854first strand
Strand 2
A
1886 1889anti-parallel
Strand 3
A
1880 1883anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2038 2042first strand
Strand 2
A
2013 2019parallel
Strand 3
A
1986 1991parallel
Strand 4
A
2057 2063parallel
Strand 5
A
2083 2094parallel
Strand 6
A
2153 2159anti-parallel
Strand 7
A
2139 2142anti-parallel
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