Analysis of interatomic Contacts of Structural Units in PDB entry:
5MPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MPX entry

There are 4 chains in PDB entry 5MPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 76PRO 190
B
 GLY 76PRO 190
C
 GLY 76PRO 190
D
 GLY 76PRO 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5MPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 121Right-handed alpha
Helix 2
AA2
A
123 130Right-handed alpha
Helix 3
AA3
A
147 152Right-handed alpha
Helix 4
AA4
A
153 157Right-handed 310
Helix 5
AA5
B
104 121Right-handed alpha
Helix 6
AA6
B
123 130Right-handed alpha
Helix 7
AA7
B
147 153Right-handed alpha
Helix 8
AA8
B
154 157Right-handed 310
Helix 9
AA9
C
104 121Right-handed alpha
Helix 10
AB1
C
123 130Right-handed alpha
Helix 11
AB2
C
147 152Right-handed alpha
Helix 12
AB3
C
153 155Right-handed 310
Helix 13
AB4
D
104 121Right-handed alpha
Helix 14
AB5
D
123 130Right-handed alpha
Helix 15
AB6
D
147 153Right-handed alpha
Helix 16
AB7
D
154 157Right-handed 310
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There are 5 sheets in PDB entry 5MPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
D
160 165parallel
Strand 3
D
89 94anti-parallel
Strand 4
D
141 145anti-parallel
Strand 5
D
131 135anti-parallel
Strand 6
D
179 182anti-parallel
Strand 7
D
185 187anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
131 135anti-parallel
Strand 4
A
141 145anti-parallel
Strand 5
A
89 94anti-parallel
Strand 6
A
160 165anti-parallel
Strand 7
D
80 81parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
C
160 165parallel
Strand 3
C
89 94anti-parallel
Strand 4
C
141 145anti-parallel
Strand 5
C
131 135anti-parallel
Strand 6
C
179 182anti-parallel
Strand 7
C
185 187anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
179 182anti-parallel
Strand 3
B
131 135anti-parallel
Strand 4
B
141 145anti-parallel
Strand 5
B
89 94anti-parallel
Strand 6
B
160 165anti-parallel
Strand 7
C
80 81parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 170first strand
Strand 2
D
175 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il