Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQ4 entry

There are 6 chains in PDB entry 5MQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1002GLN 1114
B
 GLY 1004GLN 1114
C
 MET 0GLN 1114
D
 GLY 1004GLN 1114
E
 GLY 1004GLN 1114
F
 GLY 1004GLN 1114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5MQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1002 1023Right-handed alpha
Helix 2
AA2
A
1024 1074Right-handed alpha
Helix 3
AA3
A
1097 1109Right-handed alpha
Helix 4
AA4
A
1110 1112Right-handed 310
Helix 5
AA5
B
1005 1074Right-handed alpha
Helix 6
AA6
B
1097 1109Right-handed alpha
Helix 7
AA7
B
1110 1112Right-handed 310
Helix 8
AA8
C
1005 1074Right-handed alpha
Helix 9
AA9
C
1097 1109Right-handed alpha
Helix 10
AB1
C
1110 1112Right-handed 310
Helix 11
AB2
D
1005 1074Right-handed alpha
Helix 12
AB3
D
1097 1109Right-handed alpha
Helix 13
AB4
E
1005 1074Right-handed alpha
Helix 14
AB5
E
1097 1109Right-handed alpha
Helix 15
AB6
E
1110 1112Right-handed 310
Helix 16
AB7
F
1005 1074Right-handed alpha
Helix 17
AB8
F
1097 1109Right-handed alpha
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There are 6 sheets in PDB entry 5MQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1095anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1087 1090first strand
Strand 2
B
1093 1095anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1087 1090first strand
Strand 2
C
1093 1095anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1087 1090first strand
Strand 2
D
1093 1095anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1087 1090first strand
Strand 2
E
1093 1095anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1087 1090first strand
Strand 2
F
1093 1095anti-parallel
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