Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQ6 entry

There is 1 chain in PDB entry 5MQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14ALA 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5MQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
37 40Right-handed 310
Helix 4
AA4
A
46 48Right-handed 310
Helix 5
AA5
A
50 55Right-handed alpha
Helix 6
AA6
A
56 58Right-handed 310
Helix 7
AA7
A
63 69Right-handed alpha
Helix 8
AA8
A
87 100Right-handed alpha
Helix 9
AA9
A
120 125Right-handed alpha
Helix 10
AB1
A
135 140Right-handed alpha
Helix 11
AB2
A
142 147Right-handed alpha
Helix 12
AB3
A
156 171Right-handed alpha
Helix 13
AB4
A
236 240Right-handed 310
Helix 14
AB5
A
248 250Right-handed 310
Helix 15
AB6
A
251 256Right-handed alpha
Helix 16
AB7
A
264 268Right-handed 310
Helix 17
AB8
A
278 290Right-handed alpha
Helix 18
AB9
A
314 322Right-handed alpha
Helix 19
AC1
A
327 341Right-handed alpha
Helix 20
AC2
A
354 361Right-handed 310
Helix 21
AC3
A
362 367Right-handed alpha
Helix 22
AC4
A
377 407Right-handed alpha
Helix 23
AC5
A
409 417Right-handed alpha
Helix 24
AC6
A
421 425Right-handed 310
Helix 25
AC7
A
432 437Right-handed alpha
Helix 26
AC8
A
482 486Right-handed 310
Helix 27
AC9
A
487 493Right-handed alpha
Helix 28
AD1
A
498 502Right-handed 310
Helix 29
AD2
A
503 512Right-handed alpha
Helix 30
AD3
A
540 563Right-handed alpha
Helix 31
AD4
A
572 586Right-handed alpha
Helix 32
AD5
A
587 594Right-handed 310
Helix 33
AD6
A
599 603Right-handed 310
Helix 34
AD7
A
615 622Right-handed alpha
Helix 35
AD8
A
629 642Right-handed alpha
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There are 7 sheets in PDB entry 5MQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
230 232anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
109 112parallel
Strand 3
A
78 84parallel
Strand 4
A
210 221parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
181 189anti-parallel
Strand 7
A
495 497parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
109 112parallel
Strand 3
A
78 84parallel
Strand 4
A
210 221parallel
Strand 5
A
527 529parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
471 474parallel
Strand 3
A
271 275parallel
Strand 4
A
294 299parallel
Strand 5
A
442 446parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
428 429parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
459 462anti-parallel
Strand 3
A
465 468anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 571first strand
Strand 2
A
649 653anti-parallel
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