Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQ9 entry

There are 2 chains in PDB entry 5MQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 173
B
 ASP 2ALA 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5MQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
22 45Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
120 145Right-handed alpha
Helix 8
AA8
A
152 160Right-handed alpha
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
B
8 15Right-handed alpha
Helix 11
AB2
B
15 20Right-handed alpha
Helix 12
AB3
B
22 45Right-handed alpha
Helix 13
AB4
B
79 92Right-handed alpha
Helix 14
AB5
B
111 114Right-handed 310
Helix 15
AB6
B
120 145Right-handed alpha
Helix 16
AB7
B
152 160Right-handed alpha
Helix 17
AB8
B
162 173Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5MQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
47 52parallel
Strand 3
A
3 7parallel
Strand 4
A
98 101parallel
Strand 5
A
116 119parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
47 52parallel
Strand 3
B
3 7parallel
Strand 4
B
98 101parallel
Strand 5
B
116 119parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il