Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQC entry

There are 3 chains in PDB entry 5MQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 280
C
 SER 1GLY 260
B
 MET 1GLN 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5MQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
43 48Right-handed alpha
Helix 4
AA4
A
71 74Right-handed 310
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
163 165Right-handed 310
Helix 7
AA7
A
235 238Right-handed 310
Helix 8
AA8
A
275 279Right-handed 310
Helix 9
AA9
C
54 59Right-handed alpha
Helix 10
AB1
C
112 118Right-handed alpha
Helix 11
AB2
C
159 163Right-handed 310
Helix 12
AB3
B
89 94Right-handed alpha
Helix 13
AB4
B
95 103Right-handed alpha
Helix 14
AB5
B
139 148Right-handed alpha
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There are 14 sheets in PDB entry 5MQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
C
175 180anti-parallel
Strand 3
C
128 134anti-parallel
Strand 4
C
230 237anti-parallel
Strand 5
C
63 70anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
210 216anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
168 172anti-parallel
Strand 5
C
29 30parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
198 204anti-parallel
Strand 3
A
132 138anti-parallel
Strand 4
A
158 161anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
92 98parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
270 273anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
C
252 254anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
246 249anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 84first strand
Strand 2
C
210 215anti-parallel
Strand 3
C
143 149anti-parallel
Strand 4
C
165 169anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
105 108anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 190first strand
Strand 2
C
123 125anti-parallel
Strand 3
C
243 245anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
22 25anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 72first strand
Strand 2
B
208 221anti-parallel
Strand 3
B
107 118anti-parallel
Strand 4
B
168 173anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 72first strand
Strand 2
B
208 221anti-parallel
Strand 3
B
107 118anti-parallel
Strand 4
B
182 183anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 88first strand
Strand 2
B
192 200anti-parallel
Strand 3
B
127 133anti-parallel
Strand 4
B
157 162anti-parallel
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