Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQL entry

There are 4 chains in PDB entry 5MQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19LEU 260
B
 ILE 21LEU 260
C
 THR 19LEU 260
D
 ARG 20LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 5MQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
88 112Right-handed alpha
Helix 5
AA5
A
114 119Right-handed 310
Helix 6
AA6
A
129 144Right-handed alpha
Helix 7
AA7
A
148 165Right-handed alpha
Helix 8
AA8
A
181 193Right-handed alpha
Helix 9
AA9
A
201 217Right-handed alpha
Helix 10
AB1
A
225 231Right-handed 310
Helix 11
AB2
A
246 259Right-handed alpha
Helix 12
AB3
B
33 45Right-handed alpha
Helix 13
AB4
B
80 88Right-handed alpha
Helix 14
AB5
B
88 113Right-handed alpha
Helix 15
AB6
B
114 119Right-handed 310
Helix 16
AB7
B
131 136Right-handed alpha
Helix 17
AB8
B
136 144Right-handed alpha
Helix 18
AB9
B
148 166Right-handed alpha
Helix 19
AC1
B
181 193Right-handed alpha
Helix 20
AC2
B
194 198Right-handed 310
Helix 21
AC3
B
201 217Right-handed alpha
Helix 22
AC4
B
225 231Right-handed 310
Helix 23
AC5
B
246 257Right-handed alpha
Helix 24
AC6
C
33 43Right-handed alpha
Helix 25
AC7
C
54 60Right-handed alpha
Helix 26
AC8
C
80 88Right-handed alpha
Helix 27
AC9
C
88 114Right-handed alpha
Helix 28
AD1
C
115 118Right-handed 310
Helix 29
AD2
C
130 135Right-handed alpha
Helix 30
AD3
C
136 143Right-handed alpha
Helix 31
AD4
C
148 164Right-handed alpha
Helix 32
AD5
C
181 193Right-handed alpha
Helix 33
AD6
C
195 199Right-handed 310
Helix 34
AD7
C
201 217Right-handed alpha
Helix 35
AD8
C
227 231Right-handed 310
Helix 36
AD9
C
246 260Right-handed alpha
Helix 37
AE1
D
33 45Right-handed alpha
Helix 38
AE2
D
79 88Right-handed alpha
Helix 39
AE3
D
88 112Right-handed alpha
Helix 40
AE4
D
113 119Right-handed 310
Helix 41
AE5
D
129 136Right-handed alpha
Helix 42
AE6
D
136 144Right-handed alpha
Helix 43
AE7
D
148 166Right-handed alpha
Helix 44
AE8
D
181 193Right-handed alpha
Helix 45
AE9
D
201 216Right-handed alpha
Helix 46
AF1
D
225 230Right-handed 310
Helix 47
AF2
D
241 247Right-handed 310
Helix 48
AF3
D
248 260Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5MQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
123 127parallel
Strand 3
A
22 28parallel
Strand 4
A
175 179parallel
Strand 5
A
233 237parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
123 127parallel
Strand 3
B
23 28parallel
Strand 4
B
174 179parallel
Strand 5
B
233 237parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
123 127parallel
Strand 3
C
22 28parallel
Strand 4
C
174 179parallel
Strand 5
C
233 237parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
123 127parallel
Strand 3
D
22 28parallel
Strand 4
D
174 179parallel
Strand 5
D
233 237parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il