Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQO entry

There is 1 chain in PDB entry 5MQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22ARG 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5MQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 61Right-handed alpha
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
102 118Right-handed alpha
Helix 4
AA4
A
119 137Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
191 209Right-handed alpha
Helix 7
AA7
A
211 231Right-handed alpha
Helix 8
AA8
A
236 241Right-handed 310
Helix 9
AA9
A
242 256Right-handed alpha
Helix 10
AB1
A
257 271Right-handed alpha
Helix 11
AB2
A
286 290Right-handed 310
Helix 12
AB3
A
296 315Right-handed alpha
Helix 13
AB4
A
316 334Right-handed alpha
Helix 14
AB5
A
356 360Right-handed 310
Helix 15
AB6
A
381 400Right-handed alpha
Helix 16
AB7
A
401 415Right-handed alpha
Helix 17
AB8
A
416 420Right-handed 310
Helix 18
AB9
A
457 467Right-handed alpha
Helix 19
AC1
A
468 472Right-handed 310
Helix 20
AC2
A
590 594Right-handed 310
Helix 21
AC3
A
611 617Right-handed 310
Helix 22
AC4
A
618 620Right-handed 310
Helix 23
AC5
A
680 682Right-handed 310
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There are 6 sheets in PDB entry 5MQO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
489 494anti-parallel
Strand 3
A
500 507anti-parallel
Strand 4
A
514 521anti-parallel
Strand 5
A
572 577anti-parallel
Strand 6
A
542 546anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
361 364anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
480 483anti-parallel
Strand 3
A
529 535parallel
Strand 4
A
559 565anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 584first strand
Strand 2
A
598 601anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
695 697parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 637first strand
Strand 2
A
640 651anti-parallel
Strand 3
A
670 676anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il