Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQQ entry

There are 6 chains in PDB entry 5MQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18ASP 220
B
 PRO 20GLN 218
C
 ASN 19ASP 220
D
 PRO 20LYS 222
E
 ASN 19ASP 220
F
 ASN 19ASP 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 74 helices in PDB entry 5MQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
62 87Right-handed alpha
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
113 127Right-handed 310
Helix 7
AA7
A
128 151Right-handed alpha
Helix 8
AA8
A
153 156Right-handed 310
Helix 9
AA9
A
157 165Right-handed alpha
Helix 10
AB1
A
166 169Right-handed 310
Helix 11
AB2
A
186 199Right-handed alpha
Helix 12
AB3
A
207 219Right-handed alpha
Helix 13
AB4
B
21 36Right-handed alpha
Helix 14
AB5
B
41 50Right-handed alpha
Helix 15
AB6
B
52 60Right-handed alpha
Helix 16
AB7
B
62 87Right-handed alpha
Helix 17
AB8
B
91 108Right-handed alpha
Helix 18
AB9
B
113 127Right-handed 310
Helix 19
AC1
B
128 151Right-handed alpha
Helix 20
AC2
B
153 156Right-handed 310
Helix 21
AC3
B
157 165Right-handed alpha
Helix 22
AC4
B
166 169Right-handed 310
Helix 23
AC5
B
186 200Right-handed alpha
Helix 24
AC6
B
207 218Right-handed alpha
Helix 25
AC7
C
20 36Right-handed alpha
Helix 26
AC8
C
41 50Right-handed alpha
Helix 27
AC9
C
52 60Right-handed alpha
Helix 28
AD1
C
62 87Right-handed alpha
Helix 29
AD2
C
91 108Right-handed alpha
Helix 30
AD3
C
113 127Right-handed 310
Helix 31
AD4
C
128 151Right-handed alpha
Helix 32
AD5
C
153 156Right-handed 310
Helix 33
AD6
C
157 165Right-handed alpha
Helix 34
AD7
C
166 169Right-handed 310
Helix 35
AD8
C
186 199Right-handed alpha
Helix 36
AD9
C
207 220Right-handed alpha
Helix 37
AE1
D
21 36Right-handed alpha
Helix 38
AE2
D
41 50Right-handed alpha
Helix 39
AE3
D
52 60Right-handed alpha
Helix 40
AE4
D
62 86Right-handed alpha
Helix 41
AE5
D
91 108Right-handed alpha
Helix 42
AE6
D
113 127Right-handed 310
Helix 43
AE7
D
128 151Right-handed alpha
Helix 44
AE8
D
153 156Right-handed 310
Helix 45
AE9
D
157 165Right-handed alpha
Helix 46
AF1
D
166 169Right-handed 310
Helix 47
AF2
D
186 199Right-handed alpha
Helix 48
AF3
D
207 221Right-handed alpha
Helix 49
AF4
E
20 36Right-handed alpha
Helix 50
AF5
E
41 50Right-handed alpha
Helix 51
AF6
E
52 60Right-handed alpha
Helix 52
AF7
E
62 87Right-handed alpha
Helix 53
AF8
E
91 108Right-handed alpha
Helix 54
AF9
E
113 127Right-handed 310
Helix 55
AG1
E
128 151Right-handed alpha
Helix 56
AG2
E
153 156Right-handed 310
Helix 57
AG3
E
157 165Right-handed alpha
Helix 58
AG4
E
166 169Right-handed 310
Helix 59
AG5
E
186 199Right-handed alpha
Helix 60
AG6
E
207 219Right-handed alpha
Helix 61
AG7
F
20 36Right-handed alpha
Helix 62
AG8
F
41 50Right-handed alpha
Helix 63
AG9
F
52 60Right-handed alpha
Helix 64
AH1
F
62 73Right-handed alpha
Helix 65
AH2
F
75 83Right-handed alpha
Helix 66
AH3
F
84 88Right-handed 310
Helix 67
AH4
F
91 108Right-handed alpha
Helix 68
AH5
F
113 127Right-handed 310
Helix 69
AH6
F
128 151Right-handed alpha
Helix 70
AH7
F
153 156Right-handed 310
Helix 71
AH8
F
157 165Right-handed alpha
Helix 72
AH9
F
166 169Right-handed 310
Helix 73
AI1
F
186 199Right-handed alpha
Helix 74
AI2
F
207 220Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MQQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il