Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQR entry

There are 2 chains in PDB entry 5MQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLN 371
A
 PRO 373LEU 1108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5MQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 70Right-handed 310
Helix 2
AA2
A
212 216Right-handed 310
Helix 3
AA3
A
220 224Right-handed 310
Helix 4
AA4
A
226 238Right-handed alpha
Helix 5
AA5
A
239 244Right-handed alpha
Helix 6
AA6
A
419 423Right-handed 310
Helix 7
AA7
A
425 429Right-handed 310
Helix 8
AA8
A
623 627Right-handed 310
Helix 9
AA9
A
628 638Right-handed alpha
Helix 10
AB1
A
647 659Right-handed alpha
Helix 11
AB2
A
666 682Right-handed alpha
Helix 12
AB3
A
704 708Right-handed 310
Helix 13
AB4
A
712 721Right-handed alpha
Helix 14
AB5
A
726 739Right-handed alpha
Helix 15
AB6
A
745 751Right-handed 310
Helix 16
AB7
A
754 767Right-handed alpha
Helix 17
AB8
A
768 790Right-handed alpha
Helix 18
AB9
A
800 805Right-handed 310
Helix 19
AC1
A
820 841Right-handed alpha
Helix 20
AC2
A
843 865Right-handed alpha
Helix 21
AC3
A
886 889Right-handed 310
Helix 22
AC4
A
890 895Right-handed alpha
Helix 23
AC5
A
901 906Right-handed alpha
Helix 24
AC6
A
907 912Right-handed 310
Helix 25
AC7
A
948 966Right-handed alpha
Helix 26
AC8
A
972 987Right-handed alpha
Helix 27
AC9
A
1011 1015Right-handed 310
Helix 28
AD1
A
1022 1029Right-handed alpha
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There are 15 sheets in PDB entry 5MQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
345 346parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
398 404anti-parallel
Strand 4
A
53 58anti-parallel
Strand 5
A
432 436parallel
Strand 6
A
461 469anti-parallel
Strand 7
A
565 571anti-parallel
Strand 8
A
488 493anti-parallel
Strand 9
A
499 505anti-parallel
Strand 10
A
510 514anti-parallel
Strand 11
A
519 524anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 84first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
121 124anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
156 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
203 207anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
276 279anti-parallel
Strand 3
A
284 288anti-parallel
Strand 4
A
300 301anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
335 340anti-parallel
Strand 4
A
350 353anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
601 611anti-parallel
Strand 3
A
448 453anti-parallel
Strand 4
A
442 445anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
601 611anti-parallel
Strand 3
A
471 480anti-parallel
Strand 4
A
531 538anti-parallel
Strand 5
A
543 548anti-parallel
Strand 6
A
551 557anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 663first strand
Strand 2
A
1054 1062anti-parallel
Strand 3
A
1065 1072anti-parallel
Strand 4
A
1083 1088anti-parallel
Strand 5
A
1091 1096anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
692 693anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 867first strand
Strand 2
A
872 873anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
918 919first strand
Strand 2
A
922 923anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
988 989first strand
Strand 2
A
992 993anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1043first strand
Strand 2
A
1102 1104anti-parallel
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