Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQT entry

There are 4 chains in PDB entry 5MQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20LEU 260
B
 ARG 20LEU 260
C
 THR 19LEU 260
D
 ARG 20LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5MQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 45Right-handed alpha
Helix 2
AA2
A
53 59Right-handed alpha
Helix 3
AA3
A
73 88Right-handed alpha
Helix 4
AA4
A
88 113Right-handed alpha
Helix 5
AA5
A
114 119Right-handed 310
Helix 6
AA6
A
129 136Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
148 166Right-handed alpha
Helix 9
AA9
A
181 193Right-handed alpha
Helix 10
AB1
A
196 200Right-handed 310
Helix 11
AB2
A
201 217Right-handed alpha
Helix 12
AB3
A
225 230Right-handed 310
Helix 13
AB4
A
246 259Right-handed alpha
Helix 14
AB5
B
33 44Right-handed alpha
Helix 15
AB6
B
54 60Right-handed alpha
Helix 16
AB7
B
80 88Right-handed alpha
Helix 17
AB8
B
88 113Right-handed alpha
Helix 18
AB9
B
114 118Right-handed 310
Helix 19
AC1
B
129 136Right-handed alpha
Helix 20
AC2
B
136 144Right-handed alpha
Helix 21
AC3
B
148 164Right-handed alpha
Helix 22
AC4
B
181 193Right-handed alpha
Helix 23
AC5
B
194 198Right-handed 310
Helix 24
AC6
B
201 217Right-handed alpha
Helix 25
AC7
B
225 231Right-handed 310
Helix 26
AC8
B
246 259Right-handed alpha
Helix 27
AC9
C
33 43Right-handed alpha
Helix 28
AD1
C
53 58Right-handed alpha
Helix 29
AD2
C
73 88Right-handed alpha
Helix 30
AD3
C
88 113Right-handed alpha
Helix 31
AD4
C
129 136Right-handed alpha
Helix 32
AD5
C
136 144Right-handed alpha
Helix 33
AD6
C
148 165Right-handed alpha
Helix 34
AD7
C
181 193Right-handed alpha
Helix 35
AD8
C
196 200Right-handed 310
Helix 36
AD9
C
201 217Right-handed alpha
Helix 37
AE1
C
227 231Right-handed 310
Helix 38
AE2
C
246 260Right-handed alpha
Helix 39
AE3
D
33 43Right-handed alpha
Helix 40
AE4
D
53 58Right-handed alpha
Helix 41
AE5
D
76 88Right-handed alpha
Helix 42
AE6
D
88 114Right-handed alpha
Helix 43
AE7
D
115 119Right-handed 310
Helix 44
AE8
D
129 136Right-handed alpha
Helix 45
AE9
D
136 144Right-handed alpha
Helix 46
AF1
D
148 166Right-handed alpha
Helix 47
AF2
D
167 169Right-handed 310
Helix 48
AF3
D
181 193Right-handed alpha
Helix 49
AF4
D
194 198Right-handed 310
Helix 50
AF5
D
201 216Right-handed alpha
Helix 51
AF6
D
225 231Right-handed 310
Helix 52
AF7
D
246 260Right-handed alpha
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There are 4 sheets in PDB entry 5MQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
123 127parallel
Strand 3
A
22 27parallel
Strand 4
A
174 179parallel
Strand 5
A
233 237parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
123 127parallel
Strand 3
B
22 27parallel
Strand 4
B
174 179parallel
Strand 5
B
233 237parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
123 127parallel
Strand 3
C
22 27parallel
Strand 4
C
174 179parallel
Strand 5
C
233 237parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
123 127parallel
Strand 3
D
22 28parallel
Strand 4
D
174 179parallel
Strand 5
D
233 237parallel
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