Analysis of interatomic Contacts of Structural Units in PDB entry:
5MQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MQW entry

There is 1 chain in PDB entry 5MQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5MQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 29Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
118 122Right-handed 310
Helix 4
AA4
A
136 140Right-handed 310
Helix 5
AA5
A
146 150Right-handed 310
Helix 6
AA6
A
196 207Right-handed alpha
Helix 7
AA7
A
216 224Right-handed alpha
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There are 3 sheets in PDB entry 5MQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
158 167anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
34 42anti-parallel
Strand 5
A
48 56anti-parallel
Strand 6
A
208 214anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
176 182anti-parallel
Strand 3
A
123 127anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
239 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il