Analysis of interatomic Contacts of Structural Units in PDB entry:
5MRS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MRS entry

There are 4 chains in PDB entry 5MRS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	SER 199
B	VAL 1	SER 199
C	VAL 1	SER 199
D	VAL 1	SER 199

There are 12 helices in PDB entry 5MRS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed 310
Helix 2	AA2	A	174	178	Right-handed 310
Helix 3	AA3	A	185	193	Right-handed alpha
Helix 4	AA4	B	34	38	Right-handed 310
Helix 5	AA5	B	174	178	Right-handed 310
Helix 6	AA6	B	185	192	Right-handed alpha
Helix 7	AA7	C	34	38	Right-handed 310
Helix 8	AA8	C	174	178	Right-handed 310
Helix 9	AA9	C	185	193	Right-handed alpha
Helix 10	AB1	D	34	38	Right-handed 310
Helix 11	AB2	D	174	178	Right-handed 310
Helix 12	AB3	D	185	193	Right-handed alpha

There are 12 sheets in PDB entry 5MRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	74	80	parallel
Strand 3	A	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	8	11	anti-parallel
Strand 3	A	43	46	anti-parallel
Strand 4	A	49	58	anti-parallel
Strand 5	A	64	69	anti-parallel
Strand 6	A	28	33	anti-parallel
Strand 7	A	21	25	anti-parallel
Strand 8	A	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	109	124	anti-parallel
Strand 3	A	127	135	anti-parallel
Strand 4	A	180	184	anti-parallel
Strand 5	A	155	162	anti-parallel
Strand 6	A	147	149	anti-parallel
Strand 7	A	100	105	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	74	80	parallel
Strand 3	B	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	8	11	anti-parallel
Strand 3	B	43	46	anti-parallel
Strand 4	B	49	58	anti-parallel
Strand 5	B	64	69	anti-parallel
Strand 6	B	28	33	anti-parallel
Strand 7	B	21	25	anti-parallel
Strand 8	B	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	109	124	anti-parallel
Strand 3	B	127	135	anti-parallel
Strand 4	B	180	184	anti-parallel
Strand 5	B	155	162	anti-parallel
Strand 6	B	147	149	anti-parallel
Strand 7	B	100	105	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	74	80	parallel
Strand 3	C	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	8	11	anti-parallel
Strand 3	C	43	45	anti-parallel
Strand 4	C	50	58	anti-parallel
Strand 5	C	64	69	anti-parallel
Strand 6	C	28	33	anti-parallel
Strand 7	C	21	25	anti-parallel
Strand 8	C	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	109	124	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	180	184	anti-parallel
Strand 5	C	155	162	anti-parallel
Strand 6	C	147	149	anti-parallel
Strand 7	C	100	105	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	74	80	parallel
Strand 3	D	86	88	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	8	11	anti-parallel
Strand 3	D	43	46	anti-parallel
Strand 4	D	49	58	anti-parallel
Strand 5	D	64	69	anti-parallel
Strand 6	D	28	33	anti-parallel
Strand 7	D	21	25	anti-parallel
Strand 8	D	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	109	124	anti-parallel
Strand 3	D	127	135	anti-parallel
Strand 4	D	180	184	anti-parallel
Strand 5	D	155	162	anti-parallel
Strand 6	D	147	149	anti-parallel
Strand 7	D	100	105	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MRS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MRS