Analysis of interatomic Contacts of Structural Units in PDB entry:
5MRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MRT entry

There are 2 chains in PDB entry 5MRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 205
B
 ALA 1SER 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5MRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
129 131Right-handed 310
Helix 4
AA4
A
191 199Right-handed alpha
Helix 5
AA5
B
38 42Right-handed 310
Helix 6
AA6
B
129 131Right-handed 310
Helix 7
AA7
B
191 199Right-handed alpha
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There are 8 sheets in PDB entry 5MRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
78 84parallel
Strand 3
A
90 92anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
18 22anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
25 29anti-parallel
Strand 6
A
201 202anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
113 127anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
186 190anti-parallel
Strand 5
A
160 165anti-parallel
Strand 6
A
152 154anti-parallel
Strand 7
A
104 109anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
78 84parallel
Strand 3
B
90 92anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
18 22anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
25 29anti-parallel
Strand 6
B
201 202anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
113 127anti-parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
186 190anti-parallel
Strand 5
B
160 166anti-parallel
Strand 6
B
152 154anti-parallel
Strand 7
B
104 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il