Analysis of interatomic Contacts of Structural Units in PDB entry:
5MRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MRV entry

There are 3 chains in PDB entry 5MRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23TRP 329
B
 GLU 23TRP 329
C
 PHE 1ALA 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5MRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 47Right-handed alpha
Helix 2
AA2
A
92 109Right-handed alpha
Helix 3
AA3
A
112 121Right-handed alpha
Helix 4
AA4
A
131 141Right-handed alpha
Helix 5
AA5
A
161 165Right-handed 310
Helix 6
AA6
A
192 206Right-handed alpha
Helix 7
AA7
A
235 255Right-handed alpha
Helix 8
AA8
A
263 267Right-handed alpha
Helix 9
AA9
A
273 281Right-handed alpha
Helix 10
AB1
A
302 304Right-handed 310
Helix 11
AB2
A
305 327Right-handed alpha
Helix 12
AB3
B
32 47Right-handed alpha
Helix 13
AB4
B
92 109Right-handed alpha
Helix 14
AB5
B
112 121Right-handed alpha
Helix 15
AB6
B
131 141Right-handed alpha
Helix 16
AB7
B
161 165Right-handed 310
Helix 17
AB8
B
192 205Right-handed alpha
Helix 18
AB9
B
235 255Right-handed alpha
Helix 19
AC1
B
263 267Right-handed alpha
Helix 20
AC2
B
273 281Right-handed alpha
Helix 21
AC3
B
302 304Right-handed 310
Helix 22
AC4
B
305 327Right-handed alpha
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There are 5 sheets in PDB entry 5MRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
79 85parallel
Strand 5
A
209 216parallel
Strand 6
A
285 290parallel
Strand 7
A
221 224anti-parallel
Strand 8
A
259 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
157 158anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 58first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
79 85parallel
Strand 5
B
209 216parallel
Strand 6
B
285 290parallel
Strand 7
B
221 224anti-parallel
Strand 8
B
259 262parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
157 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
22 29anti-parallel
Strand 3
C
36 44anti-parallel
Strand 4
C
47 48anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il