Analysis of interatomic Contacts of Structural Units in PDB entry:
5MS2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MS2 entry

There are 2 chains in PDB entry 5MS2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25ASP 429
B
 LYS 5PHE 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MS2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
73 75Right-handed 310
Helix 6
AA6
A
136 153Right-handed alpha
Helix 7
AA7
A
205 212Right-handed alpha
Helix 8
AA8
A
220 233Right-handed alpha
Helix 9
AA9
A
254 276Right-handed alpha
Helix 10
AB1
A
288 293Right-handed alpha
Helix 11
AB2
A
294 308Right-handed alpha
Helix 12
AB3
A
312 322Right-handed alpha
Helix 13
AB4
A
328 346Right-handed alpha
Helix 14
AB5
A
358 380Right-handed alpha
Helix 15
AB6
A
384 398Right-handed alpha
Helix 16
AB7
A
399 413Right-handed alpha
Helix 17
AB8
A
417 423Right-handed alpha
Helix 18
AB9
B
6 11Right-handed alpha
Helix 19
AC1
B
12 22Right-handed alpha
Helix 20
AC2
B
59 71Right-handed alpha
Helix 21
AC3
B
94 103Right-handed alpha
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There are 6 sheets in PDB entry 5MS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
310 311anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
110 114anti-parallel
Strand 4
A
157 167parallel
Strand 5
A
176 185anti-parallel
Strand 6
A
190 198anti-parallel
Strand 7
A
238 239parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
157 167parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
190 198anti-parallel
Strand 6
A
243 247parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
285 286parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
426 427parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
31 37anti-parallel
Strand 3
B
109 114parallel
Strand 4
B
80 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il