Analysis of interatomic Contacts of Structural Units in PDB entry:
5MS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MS8 entry

There is 1 chain in PDB entry 5MS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 47ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5MS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
64 72Right-handed alpha
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
136 152Right-handed alpha
Helix 5
AA5
A
203 207Right-handed 310
Helix 6
AA6
A
209 214Right-handed alpha
Helix 7
AA7
A
220 232Right-handed alpha
Helix 8
AA8
A
257 275Right-handed alpha
Helix 9
AA9
A
288 293Right-handed alpha
Helix 10
AB1
A
294 308Right-handed alpha
Helix 11
AB2
A
312 321Right-handed alpha
Helix 12
AB3
A
328 344Right-handed alpha
Helix 13
AB4
A
358 378Right-handed alpha
Helix 14
AB5
A
384 393Right-handed alpha
Helix 15
AB6
A
393 398Right-handed alpha
Helix 16
AB7
A
399 412Right-handed alpha
Helix 17
AB8
A
417 423Right-handed alpha
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There are 4 sheets in PDB entry 5MS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
310 311anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
110 114anti-parallel
Strand 4
A
157 167parallel
Strand 5
A
176 185anti-parallel
Strand 6
A
190 197anti-parallel
Strand 7
A
238 239parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
157 167parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
243 246parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
426 427parallel
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